Job Description P21170 Confidence 99.51% Date Thu Jan 5 11:37:56 GMT 2012 Rank 33 Aligned Residues 196 % Identity 14% Template c1w8gA_ PDB info PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs Resolution 2.0 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																						.																																										.	.	.	.
Query SS confidence																						.																																										.	.	.	.
Query Sequence		L	Q	H	R	L	R	S	I	N	A	A	F	K	R	A	R	E	S	Y	G	.	Y	N	G	D	Y	F	L	V	Y	P	I	K	V	N	Q	H	R	R	V	I	E	S	L	I	H	S	G	E	P	L	G	L	E	A	G	S	K	A	E	L	M	.	.	.	.	A	V	L	A	H	A	G	M	T	R	S	V	I	V
Query Conservation																						.																																										.	.	.	.
Alig confidence																						.																.														.												.	.	.	.
Template Conservation																																						.														.
Template Sequence		I	A	H	N	L	A	Q	V	R	D	K	I	S	A	A	A	T	R	C	G	R	S	P	E	E	I	T	L	L	A	V	S	K	T	K	P	.	A	S	A	I	A	E	A	I	D	A	G	Q	R	.	Q	F	G	E	N	Y	V	Q	E	G	V	D	K	I	R	H	F	Q	E	L	G	V	T	G	L	E	W	H	F
Template Known Secondary structure																				T	T			G	G	G								T	T	S		.										T	T			.					S	S														T	T			S
Template Predicted Secondary structure																																						.														.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		C	N	G	Y	K	D	R	E	Y	I	R	L	A	L	I	G	E	K	M	G	H	K	V	Y	L	V	I	E	K	M	S	E	I	A	I	V	L	D	E	A	E	R	L	N	V	V	P	R	L	G	V	R	A	R	L	A	S	Q	G	S	G	K	W	Q	S	S	G	G	E	K	S	K	F	G	L	A	A	T	Q	V
Query Conservation
Alig confidence																	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	P	L	Q	S	N	K	S	R	L	V	A	E	H	.	.	.	.	.	F	D	W	C	H	T	I	D	R	L	R	I	A	T	R	L	N	D	Q	R	P	A	E	L	P	P	L	N	V	L	I	Q	I	N	.	.	.	.	.	.	.	.	.	.	.	I	S	D	E	N	S	K	S	G	I	Q	L	A	E	L
Template Known Secondary structure			S				G	G	G								.	.	.	.	.		S							S											S		T	T	S											.	.	.	.	.	.	.	.	.	.	.		S		T	T				S	B		G	G	G
Template Predicted Secondary structure																	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130												.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	L	V	E	T	L	R	E	A	G	R	L	D	S	L	Q	L	L	H	F	H	L	G	S	Q	M	A	N	I	R	D	I	A	T	G	V	R	E	S	A	R	F	Y	V	E	L	H	K	L	G	V	N	I	Q	C	F	D	V	G	G
Query Conservation
Alig confidence																.												.
Template Conservation																.												.
Template Sequence		D	E	L	A	A	A	V	A	E	L	P	R	L	R	.	L	R	G	L	M	A	I	P	A	P	E	.	S	E	Y	V	R	Q	F	E	V	A	R	Q	M	A	V	A	F	A	G	L	K	T	R	Y	P	H	I	D	T	L	S	L	G	M
Template Known Secondary structure										T		T	T			.												.																								S	T	T
Template Predicted Secondary structure																.												.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions