Job Description P31122 Confidence 3.26% Date Thu Jan 5 11:47:09 GMT 2012 Rank 11 Aligned Residues 380 % Identity 8% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		S	R	K	V	A	W	L	R	V	V	T	L	A	V	A	A	F	I	F	N	T	T	E	F	V	P	V	G	L	L	S	.	D	I	A	Q	S	F	H	M	Q	T	A	Q	V	G	I	M	L	T	I	Y	A	W	V	V	A	L	M	S	L	P	F	M	L	M	T	S	Q	V	E	R	R	K	L	L	I	C	L	F
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		W	R	R	N	H	F	L	N	A	T	L	S	V	I	G	L	N	A	A	L	V	S	L	W	F	V	G	Q	A	G	A	M	D	V	T	P	L	M	R	V	D	G	F	A	M	L	Y	T	G	L	V	L	L	A	S	L	A	T	C	T	F	A	Y	P	W	L	E	G	Y	N	D	N	K	D	E	F	Y	L	L	V
Template Known Secondary structure			T																											S						S	T	T	B			S																													S	S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	F	I	A	S	H	V	L	S	F	L	S	W	S	F	T	V	L	V	I	S	R	I	G	V	A	F	A	H	A	I	F	W	S	I	T	A	S	L	A	I	R	M	A	P	A	G	K	R	A	Q	A	L	S	L	I	A	T	G	T	A	L	A	M	V	L	G	L	P	L	G	R	I	V	G	Q	Y	F	G
Query Conservation
Alig confidence																																				.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence		L	I	A	A	L	G	G	I	L	L	A	N	A	N	H	L	A	S	L	F	L	G	I	E	L	I	S	L	P	L	F	G	L	V	.	.	.	.	G	Y	A	F	R	Q	K	R	S	L	E	A	S	I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L	S
Template Known Secondary structure													T	B		S	S										T	T								.	.	.	.		T	T	T	T	S																																S	S			S
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	M	T	F	F	A	I	G	I	G	A	L	I	T	L	L	C	L	I	K	L	L	P	L	L	P	S	E	H	S	G	S	L	K	S	L	P	L	L	F	R	R	P	A	L	M	S	I	Y	L	L	T	V	V	V	V	T	A	H	Y	T	A	Y	S	Y	I	E	P	F	V	Q	N	I	A	G	F	S	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	A	L	G	K	N	E	P	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H	L	W	T	P	D	V	Y	Q	G	A	P	A	P	V	S	T	F	L	A	T	A	S	K	I	A	I	F	G	V	V	M	R	L	F	L	Y	A	P	V	G	D	S	E	A	I	R	V	V
Template Known Secondary structure		S	S		S																							T		T	T	S		T									S										T																		G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	T	A	L	L	L	L	L	G	G	A	G	I	I	G	S	V	I	F	G	K	L	G	N	Q	Y	A	S	A	L	V	S	T	A	I	A	L	L	L	V	C	L	A	L	L	L	P	A	A	N	S	E	I	H	L	G	V	L	S	I	F	W	G	I	A	M	M	I	I	G	L	G	M	Q	V	K	V	L	A
Query Conservation
Alig confidence																		.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.
Template Sequence		L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	.	.	.	.	.	.	L	S	Q	T	N	I	K	R	L	L	G	Y	S	S	I	S	H	L	G	Y	L	L	V	A	L	I	A	L	Q	T	G	E	M	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V	S	L
Template Known Secondary structure																		.	.	.	.	.	.		T			B																						T	S	S	S		S
Template Predicted Secondary structure																		.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.							.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		326	.	.	.																	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360									.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Query Sequence		L	A	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	D	V	A	M	A	L	F	S	G	I	F	N	I	G	I	G	A	G	A	L	V	G	N	Q	V	S	L	H	W	.	.	.	.	.	.	.	.	S	M	S	M	I	G	Y	V	G	A	V	P	A	F	A	A	L	I	W	S	I
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	S	P	Y	R	G	P	D	A	D	S	L	F	S	Y	R	G	L	F	W	H	R	P	I	L	A	A	V	M	T	V	M	M	L	S	L	A	G	I	P	M	T	L	G	F	I	G	K	F	Y	V	L	A	V	G	V	Q	A	H	L	W	W	L	V	G	A	V	V	V	G	S	A	I	G	L	Y	Y	Y	L
Template Known Secondary structure					S			S	S				B	G	G	G		S	S		T	T	T	S														T	T	T		T	T	S																T	T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	F	R	R	W	P	V	T	L	E	E	Q	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	A	V	S	L	Y	L	H	A	P	E	Q	P	S
Template Known Secondary structure									S
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions