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Job DescriptionP31122
Confidence100.00%DateThu Jan 5 11:47:09 GMT 2012
Rank2Aligned Residues363
% Identity14%Templatec2gfpA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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Query Sequence  VVTLAVAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVL
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Template Sequence  LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV
Template Known Secondary structure  TTSSSTTTTTTS





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   10.........20.........30.........40.........50.........60.........70.........80.........
 
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Query Sequence  SFLSWSFTVLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIVGQYFGWRMTFFAIG
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Template Sequence  AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL
Template Known Secondary structure  TSS

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   90.........100.........110.........120.........130.........140.........150.........160.........
 
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Query Sequence  IGALITLLCLIKLLPLLPSEHSGSLKSLPLLFR. . . RPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIAGFSANFATALL
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Template Sequence  VLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILF
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   170.........180.........190.........200.........210.........220.........230.........240.........
 
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Query Sequence  LLLGGAGIIGSVIFGKLGNQYASALVSTAIALLLVCLALLLPA. . . ANSEIHLGVLSIFWGIAMMIIGLGMQVKVLALAP
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Template Conservation                                                                                 
Template Sequence  ILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP
Template Known Secondary structure  TTTTTTSSSSSTSSTTT
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   250.........260.........270.........280.........290.........300.........310.........320.........
 
   329330.........340.........350.........360.........370.......
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Query Sequence  DATDVAMALFSGIFNIGIGAGALVGNQVSLHWSMSMIGYVGAVPAFAAL
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Template Sequence  FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVL
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   330.........340.........350.........360.........370........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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