Return to main results Retrieve Phyre Job Id

Job DescriptionP27434
Confidence47.45%DateThu Jan 5 11:44:01 GMT 2012
Rank90Aligned Residues30
% Identity13%Templatec3t72o_
PDB info PDB header:transcription/dnaChain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
Resolution4.33 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.....
Predicted Secondary structure 










Query SS confidence 





























Query Sequence  LGLSQQAVAERLCLKVSTVRDIEEDKAPAD
Query Conservation   



 


  
 
    
 


      
Alig confidence 





























Template Conservation     

 


  










   

 

Template Sequence  TDYTLEEVGKQFDVTRERIRQIEAKALRKL
Template Known Secondary structure  S


SS
Template Predicted Secondary structure 






Template SS confidence 





























   569570.........580.........590........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions