Job Description P27434 Confidence 33.46% Date Thu Jan 5 11:44:01 GMT 2012 Rank 122 Aligned Residues 64 % Identity 22% Template c1hf0A_ PDB info PDB header:transcription factor Chain: A: PDB Molecule:octamer-binding transcription factor 1; PDBTitle: crystal structure of the dna-binding domain of oct-1 bound2 to dna as a dimer Resolution 2.7 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																																															.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	N	A	R	E	Q	L	G	L	S	Q	Q	A	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	L	C	L	K	V	S	T	V	R	D	I	E	E	D	K	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																																																																															.
Template Sequence		F	K	Q	R	R	I	K	L	G	F	T	Q	G	D	V	G	L	A	M	G	K	L	Y	G	N	D	F	S	Q	T	T	I	S	R	F	E	A	L	N	L	S	F	K	N	M	S	K	L	K	P	L	L	E	K	W	L	N	D	A	E	R	K	K	R	T	S	I	E	T	N	I	R	V	A	L	E	K	.	S	F
Template Known Secondary structure									T	T														S	S													T	T		S																																						.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	L	A	S	T	F	L	R	G	Y	I	R	S	Y	A	R	L	V	H	I	P	E	E	E	L	L	P	G	L	E	K
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		L	E	N	Q	K	P	T	S	.	.	E	E	I	T	M	I	A	D	Q	L	N	M	E	K	E	V	I	R	V	W	F	S	N
Template Known Secondary structure					S	S				.	.											T
Template Predicted Secondary structure										.	.
Template SS confidence
		121	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions