Job Description P0A9T6 Confidence 74.28% Date Thu Jan 5 11:11:19 GMT 2012 Rank 270 Aligned Residues 55 % Identity 15% Template c2xsdC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1; PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.	.	.	.	.	.	.																																							.	.	50	.
Predicted Secondary structure																							.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	E	Y	L	E	P	L	D	L	K	I	N	E	L	A	E	L	L	H	V	.	.	.	.	.	.	H	R	N	S	V	S	A	L	I	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	K	L
Query Conservation																							.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	K	Q	R	R	I	K	L	G	F	T	Q	A	D	V	G	L	A	L	G	T	L	Y	G	N	V	F	S	Q	T	T	I	C	R	F	E	A	L	Q	L	S	F	K	N	M	C	K	L	K	P	L	L	N	K	W	L	E	E	T	D	S	I	E	V	G	V	K	G	A	L	E	S	H	F	L	K	C	P	K	P
Template Known Secondary structure									T	T															S													T	T		S	B																																					S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	E	M	A	F	R	L	A	K	V	F	D	T	T	V	D	F	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	H	E	I	T	G	L	A	D	S	L	Q	L	E	K	E	V	V
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions