Job Description P75797 Confidence 100.00% Date Thu Jan 5 12:14:15 GMT 2012 Rank 8 Aligned Residues 477 % Identity 22% Template d1zlqa1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	D	V	V	V	A	V	G	S	N	F	T	T	L	D	P	Y	D	A	N	D	T	L	S	Q	A	V	A	K	S	F	Y	Q	G	L	F	G	L	D	K	E	M	K	L	K	N	V	L	A	E	S	Y	T	V	S	D	D	G	I	T	Y	T	V	K	L	R	E	G	I	K	F	Q	D	G	T	D	F	N	A
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		P	D	E	I	T	T	A	W	P	V	N	V	G	P	L	N	P	H	L	Y	T	P	.	N	Q	M	F	A	Q	S	M	V	Y	E	P	L	V	K	Y	Q	A	D	G	S	V	I	P	W	L	A	K	S	W	T	H	S	E	D	G	K	T	W	T	F	T	L	R	D	D	V	K	F	S	N	G	E	P	F	D	A
Template Known Secondary structure										S	S				S			T	T			T	T	.	S												S					T	T	S					S	S								T	T	S									S	S		B		T	T	S		B
Template Predicted Secondary structure																								.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		A	A	V	K	A	N	L	D	R	A	S	D	P	A	N	H	L	K	R	Y	N	L	Y	K	N	I	A	K	T	E	A	I	D	P	T	T	V	K	I	T	L	K	Q	P	F	S	A	F	I	N	I	L	A	H	P	A	T	A	M	I	.	.	S	P	A	A	L	E	K	Y	G	K	E	I	G	F	Y	P	V	G
Query Conservation																																																														.	.
Alig confidence																																																														.	.
Template Conservation
Template Sequence		E	A	A	A	E	N	F	R	A	V	L	D	N	R	Q	R	H	A	W	L	E	L	A	N	Q	I	V	D	V	K	A	L	S	K	T	E	L	Q	I	T	L	K	S	A	Y	Y	P	F	L	Q	E	L	A	L	P	R	P	F	R	F	I	A	P	S	Q	F	K	N	H	E	T	M	N	G	I	K	A	P	I	G
Template Known Secondary structure													T	T	G	G	G	G	T	T	S	T											S	S	S	S							S	S			T	T						T	S	S	S	S	S					G	G	G			T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																																													.	.	.	.
Query SS confidence																																																													.	.	.	.
Query Sequence		T	G	P	Y	E	L	D	T	W	N	Q	T	D	F	V	K	V	K	K	F	A	G	Y	W	Q	P	G	L	P	K	L	D	S	I	T	W	R	P	V	A	D	N	N	T	R	A	A	M	L	Q	T	G	E	A	Q	F	A	F	P	.	.	.	.	I	P	Y	E	Q	A	T	L	L	E	K	N	K	N	I	E	L
Query Conservation																																																													.	.	.	.
Alig confidence																										.																																			.	.	.	.
Template Conservation																										.
Template Sequence		T	G	P	W	I	L	Q	E	S	K	L	N	Q	Y	D	V	F	V	R	N	E	N	Y	W	.	G	E	K	P	A	I	K	K	I	T	F	N	V	I	P	D	P	T	T	R	A	V	A	F	E	T	G	D	I	D	L	L	Y	G	N	E	G	L	L	P	L	D	T	F	A	R	F	S	Q	N	P	A	Y	H	T
Template Known Secondary structure		S	S	S								T	T	T								T	T		S	.	S				S																					T	T	S		S					S	T	T	S	S												T	T	S
Template Predicted Secondary structure																										.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		M	A	S	P	S	I	M	Q	R	Y	I	S	M	N	V	T	Q	K	P	F	D	N	P	K	V	R	E	A	L	N	Y	A	I	N	R	P	A	L	V	K	V	A	F	A	G	Y	A	T	P	A	T	G	V	V	P	P	S	I	A	.	Y	A	Q	S	Y	K	P	W	P	Y	D	P	V	K	A	R	E	L	L	K
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		Q	L	S	Q	P	I	E	T	V	M	L	A	L	N	T	A	K	A	P	T	N	E	L	A	V	R	E	A	L	N	Y	A	V	N	K	K	S	L	I	D	N	A	L	Y	G	T	Q	Q	V	A	D	T	L	F	A	P	S	V	P	Y	A	N	L	G	L	K	P	S	Q	Y	D	P	Q	K	A	K	A	L	L	E
Template Known Secondary structure																T	T	S	T	T	T	T	S																					S	T	T		S					S	S	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		340	.	.	.	.	.	.	.													.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	G	Y	P	N	G	F	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	L	W	S	S	H	N	H	S	T	A	Q	K	V	L	Q	F	T	Q	Q	Q	L	A	Q	V	G	I	K	A	Q	V	T	A	M	D	A	G	Q	R	A	A	E	V	E	G	K	G	Q	K	E	S	G	V	R	M	F	Y	T
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.
Template Sequence		K	A	G	W	T	L	P	A	G	K	D	I	R	E	K	N	G	Q	P	L	R	I	E	L	S	F	I	G	T	D	A	L	S	K	S	M	A	E	I	I	Q	A	D	M	R	Q	I	G	A	D	V	S	L	I	G	E	E	E	S	S	I	Y	A	R	Q	R	D	.	.	.	.	.	G	R	F	G	M	I	F	H
Template Known Secondary structure			T	T		B			T	T		S	S				T	T											T	T																	T	T	T																				.	.	.	.	.	T			S
Template Predicted Secondary structure																																																																					.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.						.	.	390	.	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	W	S	A	S	T	G	E	A	D	W	A	L	S	P	L	F	A	S	Q	N	W	P	P	T	L	F	N	T	A	F	Y	S	N	K	Q	V	D	D	F	L	A	Q	A	L	K	T	N	D	P	A	E	K	T	R	L	Y	K	A	A	Q	D	I	I	W	Q	E	S	P	W	I	P	L	V	V	E	K	L	V	S
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		R	T	W	G	A	P	Y	D	P	H	A	F	L	S	S	M	R	V	P	S	H	A	D	.	F	Q	A	Q	Q	G	L	A	D	K	P	L	I	D	K	E	I	G	E	V	L	A	T	H	D	E	T	Q	R	Q	A	L	Y	R	D	I	L	T	R	L	H	D	E	A	V	Y	L	P	I	S	Y	I	S	M	M	V
Template Known Secondary structure						T	T	T	T	T						G	G	G		T	T	S			.					T	T		T	T																																		T	T
Template Predicted Secondary structure																									.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.		.	.	.	.	.	.	510	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		A	H	S	K	N	L	T	G	F	W	I	M	P	D	T	G	.	F	S	F	E	D	A	D	L
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		V	S	K	P	E	L	G	N	I	P	Y	A	P	I	A	T	E	I	P	F	E	Q	I	K	P
Template Known Secondary structure					G	G	G							S	S	T	T				G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.