Job Description P77541 Confidence 89.71% Date Thu Jan 5 12:30:23 GMT 2012 Rank 340 Aligned Residues 175 % Identity 14% Template c3qldB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: structure of probable mandelate racemase (aalaa1draft_2112) from2 alicyclobacillus acidocaldarius Resolution 1.85 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	R	I	T	D	V	C	S	L	P	L	L	V	D	A	D	I	G	F	G	S	S	A	F	N	V	A	R	T	V	K	S	M	I	K	A	G	A	A	G	L	H	I	E	D	Q	V	G	A	K	R	C	G	H	R	P	N	K	A	I	V	S	K	E	E	M	V	D	R	I	R	A	A	V	D	A	K	T	D
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		L	V	G	L	L	G	G	G	R	D	R	V	E	V	S	A	T	L	G	X	S	E	S	L	D	V	L	I	Q	S	V	D	A	A	V	E	Q	G	F	R	R	V	K	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	P	G	R	D	R	A	A	I	K	A	V	R	L	R	Y	.	.
Template Known Secondary structure							T				S				B								S															T	T		S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B	T	T	B	S												.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		P	D	F	V	I	M	A	R	T	D	A	L	A	V	E	G	L	D	A	A	I	E	R	A	Q	A	Y	V	E	A	G	A	E	M	L	F	P	E	A	I	T	.	E	L	A	M	Y	R	Q	F	A	D	A	V	Q	V	P	I	L	A	N	I	T	E	F	G	A	T	P	L	F	T	T	D	E	L	R	S	A	H
Query Conservation																																											.
Alig confidence							.	.														.																					.																	.	.										.
Template Conservation							.	.														.																																						.	.										.
Template Sequence		P	D	L	A	I	.	.	A	A	D	A	N	G	S	Y	R	P	E	D	A	.	P	V	L	R	Q	L	D	A	Y	D	L	Q	F	I	E	Q	P	L	P	E	D	D	W	F	D	L	A	K	L	Q	A	S	L	R	T	P	V	.	.	C	L	D	E	S	V	R	S	V	.	R	E	L	K	L	T	A	R	L	G
Template Known Secondary structure		T	T	S			.	.					T	T				G	G	G		.						G	G	G	G			S						S		T	T											T		S	S			.	.			S	T	T			S		.										T
Template Predicted Secondary structure							.	.														.																																						.	.										.
Template SS confidence
		188	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	M	A	L	Y	P	L	S	A	F	R	A	M	N	R	A	A	E	H	V	Y	N	V	L	R	Q	E	G	T	Q	K	S	V	I	D	T	M	Q	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	R	V	L	N	V	K	P	G	R	L	G	G	F	G	A	T	L	R	A	L	D	V	A	G	E	A	G	X	A	A	W	V	G	G	X	Y	E	T
Template Known Secondary structure				S										T	S														T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions