Return to main results Retrieve Phyre Job Id

Job DescriptionP77541
Confidence52.68%DateThu Jan 5 12:30:23 GMT 2012
Rank468Aligned Residues161
% Identity14%Templatec3ngjC_
PDB info PDB header:lyaseChain: C: PDB Molecule:deoxyribose-phosphate aldolase; PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   67..70.........80.........90.. .......100.........110.........120.........130.........140.....
Predicted Secondary structure 









.






















Query SS confidence 

























.




















































Query Sequence  VLTDIRRITDVCSLPLLVDADIGFGS. SAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAV
Query Conservation 
      
      




 
 


 .    
  

     


 

 



   
 

      

  
    

 

 
Alig confidence 

























.































........












Template Conservation   
  
   
  
 
 
 





 
      
  
   
   

 


 
 
   
  
........    
  

  
 
Template Sequence  WVPLCAELLKGTGVKVCTVIGFPLGATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAK. . . . . . . . KYDDVEKDVKAVV
Template Known Secondary structure  GTTTSS
STTT

S
TT
S

TT........
Template Predicted Secondary structure 




















........
Template SS confidence 















































































   45....50.........60.........70.........80.........90.........100... ......110......
 
   146...150.........160.........170.........180....... ..190.........200.........210.........220
Predicted Secondary structure 













.....
















Query SS confidence 









































. . . . .
































Query Sequence  DAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFP. . . . . EAITELAMYRQFADAVQVPILANITEFGATPLF
Query Conservation   
    
  
 




    





 

 

 




 


.....      
        
  

       
 

  
Alig confidence 


















...



















.....































.
Template Conservation         






  
  ...


  
   
  










    


 
 
  
         








  .
Template Sequence  DASGKALTKVIIECCYLTN. . . EEKVEVCKRCVAAGAEYVKTSTGFGTHGATPEDVKLMKDTVGDKALVKAAGGIRTFD.
Template Known Secondary structure  TTS

GGGS
...T
S


SSSS



TTSSSS

S.
Template Predicted Secondary structure 








...























.
Template SS confidence 















































































   117..120.........130..... ....140.........150.........160.........170.........180.........190..
 
   221........230.........
Predicted Secondary structure 






Query SS confidence 


















Query Sequence  TTDELRSAHVAMALYPLSA
Query Conservation     

  

   
      
Alig confidence 


















Template Conservation   
   
 


 





  
Template Sequence  DAMKMINNGASRIGASAGI
Template Known Secondary structure  TTS
Template Predicted Secondary structure 







Template SS confidence 


















   193......200.........210.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions