Job Description P77541 Confidence 98.43% Date Thu Jan 5 12:30:23 GMT 2012 Rank 28 Aligned Residues 222 % Identity 18% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.					20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.	.	.	.										.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																				.	.	.	.												.	.	.	.																.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.												.	.	.	.																.	.	.	.	.	.	.	.	.
Query Sequence		S	L	H	S	P	G	K	A	F	R	A	A	L	T	K	E	N	P	.	.	.	.	L	Q	I	V	G	T	I	N	A	N	H	.	.	.	.	A	L	L	A	Q	R	A	G	Y	Q	A	I	Y	L	S	.	.	.	.	.	.	.	.	.	G	G	G	V	A	A	G	S	L	G	L	P	D	L	G	I	S	T	L
Query Conservation																				.	.	.	.												.	.	.	.																.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.												.	.	.	.																.	.	.	.	.	.	.	.	.														.
Template Conservation																																																																												.
Template Sequence		A	M	N	R	Y	Q	A	L	F	Q	R	L	S	A	A	Q	Q	G	A	F	V	P	F	V	T	I	G	D	P	N	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	.	A	K	T	T	P
Template Known Secondary structure																	T	B									T	T	S	S															T	T		S	S										T	T																.	T	T
Template Predicted Secondary structure																																																																												.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure													.																						.	.	.
Query SS confidence													.																						.	.	.
Query Sequence		D	D	V	L	T	D	I	R	R	I	T	.	D	V	C	S	L	P	L	L	V	D	A	D	I	G	F	G	S	S	A	F	N	.	.	.	V	A	R	T	V	K	S	M	I	K	A	G	A	A	G	L	H	I	E	D	Q	V	G	A	K	R	C	G	H	R	P	N	K	A	I	V	S	K	E	E	M	V	D	R
Query Conservation													.																						.	.	.
Alig confidence													.										.	.	.					.					.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.					.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	C	F	E	L	I	A	Q	I	R	A	R	N	P	E	T	P	I	G	L	.	.	.	L	M	Y	A	.	N	L	V	Y	A	R	G	I	D	D	F	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	T	N	E	S	Q	P	F
Template Known Secondary structure																T	T	S					.	.	.					.					T	T													T							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		G	G	G
Template Predicted Secondary structure																							.	.	.					.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130																.	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		I	R	A	A	V	D	A	K	T	D	P	D	F	V	I	M	A	R	T	D	A	L	A	V	E	G	L	D	A	A	I	E	R	A	Q	A	Y	V	E	A	G	A	E	M	L	F	P	E	A	I	T	E	.	L	A	M	Y	R	Q	F	A	D	A	V	Q	V	P	I	L	A	N	I	T	E	F	G	A	T	P	L
Query Conservation																																																						.
Alig confidence													.											.	.	.	.	.	.	.	.	.																						.																.	.	.
Template Conservation													.											.	.	.	.	.	.	.	.	.																																						.	.	.
Template Sequence		V	A	A	A	E	K	F	G	I	Q	P	.	I	F	I	A	P	P	T	A	S	D	.	.	.	.	.	.	.	.	.	E	T	L	R	A	V	A	Q	L	G	K	G	Y	T	Y	L	L	S	R	A	P	V	H	A	L	L	E	R	L	Q	Q	F	D	A	P	P	A	.	.	.	L	L	G	F	G	I	S	E	P
Template Known Secondary structure								T	T				.						T	T			S	.	.	.	.	.	.	.	.	.												S																				T	T					.	.	.				S	S			S
Template Predicted Secondary structure													.											.	.	.	.	.	.	.	.	.																																						.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160										.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.											.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.
Query Sequence		F	T	T	D	E	L	R	S	A	H	V	A	M	A	L	Y	P	L	S	A	F	R	A	.	.	.	.	.	.	.	.	.	.	M	N	R	A	A	E	H	V	Y	N	V	L	R	Q
Query Conservation																									.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	V	K	Q	A	I	E	A	G	A	A	G	A	I	S	G	S	A	V	V	K	I	I	E	T	H	L	D	N	P	A	K	Q	L	T	E	L	A	N	F	T	Q	A	M	K	K
Template Known Secondary structure										T	T		S					S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions