Job Description P77541 Confidence 72.94% Date Thu Jan 5 12:30:23 GMT 2012 Rank 416 Aligned Residues 216 % Identity 13% Template c3gyeA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase, putative; PDBTitle: didydroorotate dehydrogenase from leishmania major Resolution 2.00 Å

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		17	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.																.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	P	L	Q	I	V	.	.	.	G	T	I	N	A	N	H	A	L	L	A	Q	R	A	G	Y	Q	A	I	Y	L	S	G	G	G	V	A	A	G	S	L	G	L	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	I	S	T	L	D	D	V	L	T	D	I	R	R	I	T	D	V	C
Query Conservation									.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.
Template Sequence		A	N	P	F	M	N	A	A	G	V	M	C	T	T	T	E	E	L	V	A	M	T	E	S	A	S	G	S	L	V	S	K	S	C	T	P	A	L	R	.	E	G	N	P	T	P	R	Y	Q	A	L	P	L	G	S	I	N	S	M	G	L	P	N	N	G	F	D	F	Y	L	A	Y	A	A	E	Q	H	D	Y	G
Template Known Secondary structure		S	S	S					T	T	S	S		S	S										S	S		S									S	S		B	.			S		S							T	T										B													T			T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	P	L	L	V	D	A	D	I	G	F	G	S	S	A	F	N	V	A	R	T	V	K	S	M	I	K	A	G	A	A	G	L	H	I	E	D	Q	V	G	A	K	R	C	G	H	R	P	N	K	A	I	V	S	K	E	E	M	V	D	R	I	R	A	A	V	D	A	K	T	D	P	D	F	V	I	M	A	R
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		K	K	P	L	F	L	S	M	S	G	L	S	M	R	E	N	V	E	M	C	K	R	L	A	A	V	A	T	E	K	G	V	I	L	E	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	F	D	A	M	R	Q	C	L	T	A	V	S	E	V	Y	P	H	S	F	G	V	K	M	P	.
Template Known Secondary structure		T										S	S																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			S								.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																																	.	.	.	.	.	.	.	.	200	.	.	.		.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		T	D	A	L	A	V	E	G	L	D	A	A	I	E	R	A	Q	A	Y	V	E	A	G	A	E	M	L	F	P	E	A	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	A	M	Y	R	Q	F	A	D	A	V	.	Q	V
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation		.	.	.
Template Sequence		.	.	.	P	Y	F	D	F	A	H	F	D	A	A	A	E	I	L	N	E	F	P	K	V	Q	F	I	T	C	I	N	S	I	G	N	G	L	V	I	D	A	E	T	E	S	V	V	I	K	P	K	Q	G	F	G	G	L	G	G	R	Y	V	L	P	T	A	L	A	N	I	N	A	F	Y	R	R	C	P	G	K
Template Known Secondary structure		.	.	.				S													T		T	T																		T	T	T	T			S		S	G	G	G	G						G	G	G	G																T	T	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	L	A	N	I	T	E	F	G	A	T	P	L	F	T	T	D	E	L	R	S	A	H	V	A	M	A	L	Y	P	L	S	A	F	R	A	M	N	R	A	A	E	H	V	Y	N	V	L	R	Q
Query Conservation
Alig confidence							.	.	.
Template Conservation							.	.	.
Template Sequence		L	I	F	G	C	.	.	.	G	G	V	Y	T	G	E	D	A	F	L	H	V	L	A	G	A	S	M	V	Q	V	G	T	A	L	Q	E	E	G	P	S	I	F	E	R	L	T	S	E	L	L	G
Template Known Secondary structure							.	.	.	S	S			S											T															T	T
Template Predicted Secondary structure							.	.	.
Template SS confidence
		245	.	.	.	.				250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions