Job Description P77541 Confidence 98.43% Date Thu Jan 5 12:30:23 GMT 2012 Rank 25 Aligned Residues 154 % Identity 16% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		P	L	L	V	D	A	D	I	G	F	G	S	S	A	F	N	V	A	R	T	V	K	S	M	I	K	A	G	A	A	G	L	H	I	E	D	Q	V	.	G	A	K	R	C	G	H	R	P	N	K	A	I	V	S	K	E	E	M	V	D	R	I	R	A	A	V	D	A	K	T	D	P	D	F	V	I	M	A	R	T
Query Conservation																																								.
Alig confidence								.	.	.																														.
Template Conservation								.	.	.
Template Sequence		P	I	A	L	Q	L	.	.	.	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L
Template Known Secondary structure		S						.	.	.			S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S
Template Predicted Secondary structure								.	.	.
Template SS confidence
		59	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.																	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query Sequence		D	A	L	A	V	E	G	L	D	A	A	I	E	R	A	Q	A	Y	V	E	A	G	A	E	M	L	F	P	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	E	L	A	M	Y	R	Q	F	A	D	A	V	.	Q	V	P	I	L	A	N	I	T	E	F	G	A	T	P	L	F	T	T
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.								.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	.	.	.	G	G	I	R	S	L	E	E	A
Template Known Secondary structure			B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						.	.	.	S	S			S
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.				.	.	.	.	.	.	210	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	L	R	S	A	H	V	A	M	A	L	Y	P	L	S	A	F	R
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		L	F	H	L	K	.	R	V	D	G	V	X	L	G	R	A	V	Y	E
Template Known Secondary structure						T	.	T	S	S					S
Template Predicted Secondary structure							.
Template SS confidence
		213	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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