Job Description P77541 Confidence 96.12% Date Thu Jan 5 12:30:23 GMT 2012 Rank 156 Aligned Residues 236 % Identity 16% Template c2nx9B_ PDB info PDB header:lyase Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha; PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae Resolution 1.70 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.																	.
Query SS confidence																																																								.	.																	.
Query Sequence		A	L	L	A	Q	R	A	G	Y	Q	A	I	Y	L	S	G	G	G	V	A	A	G	S	L	G	L	P	D	L	G	I	S	T	L	D	D	V	L	T	D	I	R	R	I	T	D	V	C	S	L	P	L	L	V	.	.	D	A	D	I	G	F	G	S	S	A	F	N	V	A	R	T	.	V	K	S	M	I	K	A
Query Conservation																																																								.	.																	.
Alig confidence																																		.	.	.																				.	.																	.
Template Conservation																																		.	.	.
Template Sequence		A	Q	Q	L	D	Q	I	G	Y	W	S	L	E	C	W	G	G	A	T	F	D	S	C	I	R	F	L	G	E	D	P	W	.	.	.	Q	R	L	R	L	L	K	Q	A	M	P	N	T	P	L	Q	M	L	L	R	G	Q	N	L	L	G	Y	R	H	Y	A	D	D	V	V	D	T	F	V	E	R	A	V	K	N
Template Known Secondary structure							T	S			S							T	T									T						.	.	.											T	T	S								G	G	G	T	T	S	S	S
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	A	G	L	H	I	E	D	Q	V	G	A	K	R	C	G	H	R	P	N	K	A	I	V	S	K	E	E	M	V	D	R	I	R	A	A	V	D	A	K	T	D	P	D	F	V	I	M	A	R	T	D	A	L	A	V	E	G	L	D	A	A	I	E	R	A	Q	A	Y	V	E	A	G	A	E	M	L	F	P
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Sequence		G	M	D	V	F	R	V	F	D	A	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	R	N	M	Q	Q	A	L	Q	A	V	K	K	M	G	A	H	A	Q	G	T	L	C	Y	T	T	S	P	V	H	.	.	N	L	Q	T	W	V	D	V	A	Q	Q	L	A	E	L	G	V	D	S	I	A	L
Template Known Secondary structure		T									T	T		.	.	.	.	.	.	.	.	.	.	.	.	.																T													T	T		.	.															T	T		S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.														.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		188				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.																.	.	.	.																																						.	.
Query SS confidence			.	.	.																.	.	.	.																																						.	.
Query Sequence		E	.	.	.	A	I	T	E	L	A	M	Y	R	Q	F	A	D	A	V	.	.	.	.	Q	V	P	I	L	A	N	I	T	E	F	G	A	T	P	L	F	T	T	D	E	L	R	S	A	H	V	A	M	A	L	Y	P	L	S	A	F	.	.	R	A	M	N	R	A	A	E	H	V	Y	N	V	L	R	Q	E	G
Query Conservation			.	.	.																.	.	.	.																																						.	.
Alig confidence			.	.	.																.	.	.	.																																						.	.
Template Conservation
Template Sequence		K	D	M	A	G	I	L	T	P	Y	A	A	E	E	L	V	S	T	L	K	K	Q	V	D	V	E	L	H	L	H	C	H	S	T	A	G	L	A	D	M	T	L	L	K	A	I	E	A	G	V	D	R	V	D	T	A	I	S	S	M	S	G	T	Y	G	H	P	A	T	E	S	L	V	A	T	L	Q	G	T	G
Template Known Secondary structure				S	S	S																		S		S									T	T	S												T	T		S					B		G	G	G		S	T	T	S			B									T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	K	S	V	I	D	T	M	Q	T	R	N	E	L	Y	E	S	I	N	Y	Y	Q	Y	E	E	K	L	D	N	L	F	A	R
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.
Template Sequence		Y	D	T	G	L	.	.	.	.	.	.	.	.	D	I	A	K	L	E	Q	I	A	A	Y	F	R	D	V	R	K	K	Y	H	A
Template Known Secondary structure		T					.	.	.	.	.	.	.	.																		T	T	G	G
Template Predicted Secondary structure							.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.									.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions