Job Description P77541 Confidence 98.08% Date Thu Jan 5 12:30:23 GMT 2012 Rank 61 Aligned Residues 220 % Identity 14% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.					20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.	.	.	.										.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.												.	.	.	.																.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.												.	.	.	.																.	.	.	.	.	.	.	.	.
Query Sequence		L	H	S	P	G	K	A	F	R	A	A	L	T	K	E	N	P	.	.	.	.	L	Q	I	V	G	T	I	N	A	N	H	.	.	.	.	A	L	L	A	Q	R	A	G	Y	Q	A	I	Y	L	S	.	.	.	.	.	.	.	.	.	G	G	G	V	A	A	G	S	L	G	L	P	D	L	G	I	S	T	L	D
Query Conservation																			.	.	.	.												.	.	.	.																.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.												.	.	.	.																.	.	.	.	.	.	.	.	.														.
Template Conservation																																																																											.
Template Sequence		M	G	R	I	S	D	K	F	T	E	L	K	E	K	R	E	K	A	L	V	S	Y	L	M	V	G	Y	P	D	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	.	N	G	I	R	F	E
Template Known Secondary structure																T	B									T	T	S	S															T	T		S									S			T	T	S														.	T	T
Template Predicted Secondary structure																																																																											.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure														.																			.	.	.
Query SS confidence														.																			.	.	.
Query Sequence		D	V	L	T	D	I	R	R	I	T	D	V	.	C	S	L	P	L	L	V	D	A	D	I	G	F	G	S	S	A	F	.	.	.	N	V	A	R	T	V	K	S	M	I	K	A	G	A	A	G	L	H	I	E	D	Q	V	G	A	K	R	C	G	H	R	P	N	K	A	I	V	S	K	E	E	M	V	D	R	I
Query Conservation														.																			.	.	.
Alig confidence														.								.	.	.					.				.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.					.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	L	E	L	S	E	T	L	R	K	E	F	P	D	I	P	F	L	L	.	.	.	M	T	Y	Y	.	N	P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	V	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	P	E	E	A	E	E	L	K
Template Known Secondary structure															T	T	S					.	.	.					.																		T	T							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.					.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130																.	.	.	.	.	.	.	.	.	140
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.
Query SS confidence																																																				.	.	.	.
Query Sequence		R	A	A	V	D	A	K	T	D	P	D	F	V	I	M	A	R	T	D	A	L	A	V	E	G	L	D	A	A	I	E	R	A	Q	A	Y	V	E	A	G	A	E	M	L	F	P	E	A	I	T	.	.	.	.	E	L	A	M	Y	R	Q	F	A	D	A	V	Q	V	P	I	L	A	N	I	T	E	F	G	A	T
Query Conservation																																																				.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.																						.	.	.	.																				.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.																																													.	.	.
Template Sequence		A	V	M	K	K	Y	V	L	S	F	V	P	L	G	A	P	T	S	T	.	.	.	.	.	.	.	.	.	.	R	K	R	I	K	L	I	C	E	A	A	D	E	M	T	Y	F	V	S	V	T	G	Y	E	R	I	K	K	K	V	E	E	Y	R	E	L	C	D	K	P	V	V	V	G	.	.	.	F	G	V	S
Template Known Secondary structure							T	T									T	T			.	.	.	.	.	.	.	.	.	.												S	S						S	S																			S						.	.	.	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.																																													.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.											160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.				.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		P	L	F	T	T	D	E	L	R	S	A	H	V	A	M	A	L	Y	P	L	S	A	F	R	.	.	.	.	A	M	N	R	A	A	E	H	V	Y	N	V	L	R	Q
Query Conservation																										.	.	.	.
Alig confidence												.														.	.	.	.
Template Conservation												.
Template Sequence		K	K	E	H	A	R	E	I	G	S	.	F	A	D	G	V	V	V	G	S	A	L	V	K	L	A	G	Q	K	K	I	E	D	L	G	N	L	V	K	E	L	K	E
Template Known Secondary structure		S									T	.	T	S	S														T	T
Template Predicted Secondary structure												.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions