Job Description P0A9Q1 Confidence 100.00% Date Thu Jan 5 11:10:58 GMT 2012 Rank 8 Aligned Residues 210 % Identity 26% Template c3q9sA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	H	I	L	I	V	E	D	E	L	V	T	R	N	T	L	K	S	I	F	E	A	E	G	Y	D	V	F	E	A	T	D	G	A	E	M	H	Q	I	L	S	E	Y	D	I	N	L	V	I	M	D	I	N	L	P	G	K	N	G	L	L	L	A	R	E	L	R	E	Q	A	N	V	A	L	M	F	L	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	R	I	L	V	I	E	D	D	H	D	I	A	N	V	L	R	X	D	L	T	D	A	G	Y	V	V	D	H	A	D	S	A	X	N	G	L	I	K	A	R	E	D	H	P	D	L	I	L	L	D	L	G	L	P	D	F	D	G	G	D	V	V	Q	R	L	R	K	N	S	A	L	P	I	I	V	L	T	A
Template Known Secondary structure										S														T	T	T							S	S											S			S								S														T	T										S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	N	E	V	D	K	I	L	G	L	E	I	G	A	D	D	Y	I	T	K	P	F	N	P	R	E	L	T	I	R	A	R	N	L	L	S	R	T	M	N	L	G	T	V	S	E	E	R	R	S	V	E	S	Y	K	F	N	G	W	E	L	D	I	N	S	R	S	L	I	G	P	D	G	E	Q	Y	K	L	P
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	D	T	V	E	E	K	V	R	L	L	G	L	G	A	D	D	Y	L	I	K	P	F	H	P	D	E	L	L	A	R	V	K	V	Q	L	R	Q	R	T	S	E	S	L	S	X	G	D	L	T	L	D	P	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	R	L	V	T	Y	K	G	E	E	L	R	L	S
Template Known Secondary structure				S											T		S					S	S																			S						T	T					T	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T					T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.													.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	E	F	R	A	M	L	H	F	C	E	N	P	G	K	I	Q	S	R	A	E	L	L	K	K	M	T	G	R	E	L	K	P	H	D	R	T	V	D	V	T	I	R	R	I	R	K	H	F	E	S	T	P	D	T	P	E	I	I	A	T	I
Query Conservation
Alig confidence																																																											.
Template Conservation																																																											.
Template Sequence		P	K	E	F	D	I	L	A	L	L	I	R	Q	P	G	R	V	Y	S	R	Q	E	I	G	Q	E	I	W	Q	G	R	L	P	E	G	S	N	V	V	D	V	H	X	A	N	L	R	A	K	L	R	D	L	D	G	Y	G	.	L	L	R	T	V
Template Known Secondary structure														S	T	T														T	T		S		T	T		S																	S				.	S	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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