 |
Job Description | P0A9Q1 | Confidence | 30.29% | Date | Thu Jan 5 11:10:58 GMT 2012 |
Rank | 318 | Aligned Residues | 45 |
% Identity | 20% | Template | c2l4aA_ |
PDB info |
PDB header:dna binding protein | Chain: A: PDB Molecule:leucine responsive regulatory protein; |
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
|
Resolution | UNK |
|
  |   |
160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . |
Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | P | R | S | E | F | R | A | M | L | H | F | C | E | N | P | G | K | I | Q | S | R | A | E | L | L | K | K | M | T | G | R | E | L | K | P | H | D | R | T | V | D | V | T | I | R | R | I | R | K | H |
Query Conservation |   |
  |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
|   |   |
|
|   |   |
|   |   |
|   |
|   | . | . |
|   |   |
|
|
|   |   |
| . | . | . | . | . |
|
|
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |
Template Sequence |   |
D | L | D | R | I | D | R | N | I | L | N | E | L | Q | K | D | G | R | I | . |
. |
S | N | V | E | L | S | K | R | V | . |
. |
. |
. |
. |
G | L | S | P | T | P | C | L | E | R | V | R | R | L | E | R | Q |
Template Known Secondary structure |   |
G |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
| . | . |
| S |  |  |  |  |  | T | T | . | . | . | . | . | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |
|  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | |
|
30 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|