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Job DescriptionP07118
Confidence100.00%DateThu Jan 5 11:00:14 GMT 2012
Rank9Aligned Residues409
% Identity30%Templated1h3na3
SCOP infoAdenine nucleotide alpha hydrolase-like Nucleotidylyl transferase Class I aminoacyl-tRNA synthetases (RS), catalytic domain
Resolution2.0

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20...... ...30.........40.........50.........60.........70.........
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Query Sequence  MEKTYNPQDIEQPLYEHWEKQGYFKP. NGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGT
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Template Sequence  MEK. YNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGW
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TTTTT


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TT




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BTT




B
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   1.. ......10.........20.........30.........40.........50.........60.........70.........
 
   80.........90.........100.........110.........120.........130.........140.........150.........
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Query Sequence  DHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVR
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Template Sequence  DAFGLPAENAALK. . . . . FGVHPK. . . . . . . . . . . . DWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLK
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SS.....TT

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GGG

BTTS
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   80.........90.. ...... .100.........110.........120.........130.........140..
 
   160.........170.........180.........190.........200.........210.........220.........230.........
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Query Sequence  LYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPED
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Template Sequence  MWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
TTTT
GGGTT...............................................
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   143......150.........160.........170.....
 
   240.........250.........260.........270.........280.........290.........300.........310.........
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Query Sequence  PRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   320.........330.........340.........350.........360.........370.........380.........390.........
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Query Sequence  ESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVEN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CWRHEDTPVEKRELEQWYLRITAYAERLLKDLEG
Template Known Secondary structure  ..............................................SS
TTSB

GGGGTTTT
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   176...180.........190.........200.........
 
   400.........410.........420.........430.........440.........450.. .
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Query Sequence  GDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNED. . . . . . . . . . . . . . . . . . . . . . . . . . E
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Template Sequence  LNW. . . PEKVKAMQRAWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPE
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GGG









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GGGG
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   210.. .......220.........230.........240.........250.........260.........270.........280......
 
   454.....460.........470.........480......... 490.........500.........510.........520........
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Query Sequence  VRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGW. . . . . PENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIK
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Template Sequence  FYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHD
Template Known Secondary structure 
TTT
S



TTSTTSTT
SSSSS

SBS

GGGTTT
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   479480.........490.........500.........510.........520.........530.........540.........550........
 
   529530.........540....... ..550.....
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Query Sequence  DENGKPQVPFHTVYMTGLI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RDDEGQKM
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Template Conservation   
      

  
   
                     
 
                               
   
 

Template Sequence  LGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVM
Template Known Secondary structure  TTS
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SBSB



TT

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   559560.........570.........580.........590.........600.........610.........620.........630........
 
   556...560.........570.........580.........590.........600.........610.........620.........630.....
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Query Sequence  SKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRL
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Template Sequence  SKSKGNGVMVGPF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VKEQGADIARITILFAAPPENEMVWTEEGV
Template Known Secondary structure 
TTTT


B.....................................S
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TTS

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   639640.........650. ........660.........670.........680.
 
   636...640
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Query Sequence  EGYRN
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Template Sequence  QGAWR
Template Known Secondary structure 
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   682....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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