 |
Job Description | P07118 | Confidence | 95.76% | Date | Thu Jan 5 11:00:14 GMT 2012 |
Rank | 74 | Aligned Residues | 100 |
% Identity | 18% | Template | c3hv0A_ |
PDB info |
PDB header:ligase | Chain: A: PDB Molecule:tryptophanyl-trna synthetase; |
PDBTitle: tryptophanyl-trna synthetase from cryptosporidium parvum
|
Resolution | 2.42 Å |
|
 |
  |   |
31 | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | Q | E | S | F | C | I | M | I | P | P | P | N | V | T | G | S | . |
L | H | M | G | H | A | F | Q | Q | T | I | M | D | T | M | I | R | Y | Q | R | M | Q | G | K | N | T | L | W | Q | V | G | T | D | H | A | G | I | A | T | Q | M | V | V | E | R | K | I | A | A | E | E | G | K | T | R | H | D | Y | G | R | E | A |
Query Conservation |   |
  |   |   |   |
|   |
|   |   |
|
|
|
|   |
|
|   | . |
|
|
|
|
|
|   |   |   |
|
|   |
|
|   |   |
|
|   |
|
|   |
|   |   |
|
|   |   |   |
|   |
|   |   |
|
|
|
|
|   |   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |   |   |
|   |   |
|
|
|
|   | . |   |
|
|
|   |   |
|
|
|
|
|   |
|   |   |   |   | . | . | . |   |   |   |
|
|   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |
| . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|   | . | . | . | . | . |
Template Sequence |   |
K | G | E | L | F | Y | L | Y | T | G | R | . |
G | P | S | S | E | S | L | H | V | G | H | L | V | P | F | L | F | . |
. |
. |
T | K | Y | L | Q | D | T | F | K | V | P | L | V | I | Q | L | T | D | D | E | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | I | F | K | S | N | L | T | L | E | E | . |
. |
. |
. |
. |
Template Known Secondary structure |   |
T | T |
|
|
|  |  |  |  |  |  | . |
|
| S | S | S | S |
| B | S | T | T |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
| T | T |
|
|  |  |  | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
| . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |
|
|
|
|
|
|  |  |  | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
271 | . | . | . | . | . | . | . | . | 280 | . | |
. | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | |
|
|
. | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
320 | . | . | . | . | . | . | . | . | . | 330 | |
|
|
|
|
  |
  |   |
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | I | D | K | I | W | E | W | K | A | E | S | G | G | T | I | T | R | Q | M | R | R | L | G | N | S | V | D | W | E | R | E | R | F | T | M | D | E | G | L | S | N | A | V | K | E | V | F | V | R | L |
Query Conservation |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |
|   |
|
|   |
|   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |
| . | . |   |
|
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
T | H | N | Y | A | Y | E | N | M | K | D | I | I | A | C | G | . |
. |
F | D | P | E | L | T | F | I | F | T | N | L | E | Y | I | A | E | L | Y | P | D | I | L | R | I |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| . | . |
|
| T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
331 | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | |
|
. | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|