Job Description P07118 Confidence 99.97% Date Thu Jan 5 11:00:14 GMT 2012 Rank 36 Aligned Residues 166 % Identity 19% Template c2wfdB_ PDB info PDB header:ligase Chain: B: PDB Molecule:leucyl-trna synthetase, cytoplasmic; PDBTitle: structure of the human cytosolic leucyl-trna synthetase2 editing domain Resolution 3.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		194	.	.	.	.	.			200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure								.	.									.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.									.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	S	M	W	H	.	.	I	R	Y	P	L	A	D	G	.	.	.	.	.	A	K	T	A	D	G	K	D	Y	L	V	V	A	T	T	R	P	E	T	L	L	G	D	T	G	V	A	V	N	P	E	D	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.									.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.									.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	G	P	Q	E	Y	T	L	L	K	L	K	V	L	E	P	Y	P	S	K	L	S	G	L	K	G	K	N	I	F	L	V	A	A	T	L	R	P	E	T	X	F	G	Q	T	N	C	W	V	R	P	D	X	K	Y	I	G	F	E	T	V	N	G	D	I	F	I	C	T	Q	K	A	A	R	N	X	S	Y	Q	G
Template Known Secondary structure																S	S			G	G	G	G	G	G	T	T	S									S		G	G	G	G	G	G								S	S	S								T	T	S															T	T	T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
																	242	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.											.	.	290	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	D	L	I	G	K	Y	V	I	L	P	L	V	N	.	R	R	I	P	I	V	G	D	E	H	A	D	M	E	K	G	T	G	C	V	K	I	T	P	A	H	D	F	N	D	Y	.	.	.	.	.	.	.	.	.	.	E	V	G	K	R	H	A	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																																.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	K	D	N	G	V	V	P	V	V	K	E	L	X	G	E	E	I	L	G	A	S	L	S	A	P	L	T	S	Y	K	V	I	Y	V	L	P	X	L	T	I	K	E	D	K	G	T	G	V	V	T	S	V	P	S	D	S	P	D	D	I	A	A	L	R	D	L	K	K	K	Q	A	L	R	A	K	Y	G	I
Template Known Secondary structure		S	S	S	S	T	T										S	G	G	G	T	T						S	S		S	S	S								S				S	S	S	S		S	S					T	T	T																			G	G	G
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.																												.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	M	I	N	I	L	T	F	D	G	D	I	R	E	S	A	Q	V	F	D	T	K	G	N	E	S	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	S	E	I	P	A	E	F	Q	K	L	E	R	F	A	A	R	K	A	V	V	A	A	V
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	D	X	V	L	P	F	E	P	V	P	V	I	E	I	P	G	F	G	N	L	S	A	V	T	I	C	D	E	L	K	I	Q	S	Q	N	D	R	E	K	L	A	E	A	K	E	K	I	Y	L	K	G	F	Y	E	G	I	X	L	V	D	G	F	K	G	Q	K	V	Q	D	V	K	K	T	I	Q	K	K	X
Template Known Secondary structure			G	G	G	T	T	T									B	T	T	T	B	S	S									T	T			S	T	T																								S	T	T	S	T	T		B
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	G	L	L	E	E	I	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	A	G	D	A	L	I	Y	X	E
Template Known Secondary structure				T	T	S
Template Predicted Secondary structure
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions