Job Description P07118 Confidence 100.00% Date Thu Jan 5 11:00:14 GMT 2012 Rank 1 Aligned Residues 857 % Identity 43% Template c1gaxB_ PDB info PDB header:ligase/rna Chain: B: PDB Molecule:valyl-trna synthetase; PDBTitle: crystal structure of thermus thermophilus valyl-trna2 synthetase complexed with trna(val) and valyl-adenylate3 analogue Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	K	T	Y	N	P	Q	D	I	E	Q	P	L	Y	E	H	W	E	K	Q	G	Y	F	K	P	N	G	D	E	S	Q	E	S	F	C	I	M	I	P	P	P	N	V	T	G	S	L	H	M	G	H	A	F	Q	Q	T	I	M	D	T	M	I	R	Y	Q	R	M	Q	G	K	N	T	L	W	Q	V	G	T	D
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		L	P	K	A	Y	D	P	K	S	V	E	P	K	W	A	E	K	W	A	K	N	P	F	V	.	A	N	P	K	S	G	K	P	P	F	V	I	F	M	P	P	P	N	V	T	G	S	L	H	M	G	H	A	L	D	N	S	L	Q	D	A	L	I	R	Y	K	R	M	R	G	F	E	A	V	W	L	P	G	T	D
Template Known Secondary structure				S	S			G	G	G	T											S				.			S	S		S	S											B	S	S	S																							T	T	S									B
Template Predicted Secondary structure																										.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	G	I	A	T	Q	M	V	V	E	R	K	I	A	A	E	E	G	K	T	R	H	D	Y	G	R	E	A	F	I	D	K	I	W	E	W	K	A	E	S	G	G	T	I	T	R	Q	M	R	R	L	G	N	S	V	D	W	E	R	E	R	F	T	M	D	E	G	L	S	N	A	V	K	E	V	F	V	R	L
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		H	A	G	I	A	T	Q	V	V	V	E	R	L	L	.	L	K	E	G	K	T	R	H	D	L	G	R	E	K	F	L	E	R	V	W	Q	W	K	E	E	S	G	G	T	I	L	K	Q	L	K	R	L	G	A	S	A	D	W	S	R	E	A	F	T	M	D	E	K	R	S	R	A	V	R	Y	A	F	S	R	Y
Template Known Secondary structure				T									T	T	T	.	T	T	T	S	S			S																													T	T					G	G	G				T	T	S
Template Predicted Secondary structure																.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	E	D	L	I	Y	R	G	K	R	L	V	N	W	D	P	K	L	R	T	A	I	S	D	L	E	V	E	N	R	E	S	K	G	S	M	W	H	I	R	Y	P	L	A	D	G	A	K	T	A	D	G	K	D	Y	L	V	V	A	T	T	R	P	E	T	L	L	G	D	T	G	V	A	V	N	P	E	D	P
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence		Y	H	E	G	L	A	Y	R	A	P	R	L	V	N	W	C	P	R	C	E	T	T	L	S	D	L	E	V	E	T	E	P	T	P	G	K	L	Y	T	L	R	Y	E	V	E	G	.	.	.	.	.	.	.	G	G	F	I	E	I	A	T	V	R	P	E	T	V	F	A	D	Q	A	I	A	V	H	P	E	D	E
Template Known Secondary structure			T	T	S	S											B	T	T	T	T	B				G	G	G																		S	S	.	.	.	.	.	.	.	S								S		S	G	G	G	T	T								T	T	G	G
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.								.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	K	D	L	I	G	K	Y	V	I	L	P	L	V	N	R	R	I	P	I	V	G	D	E	H	A	D	M	E	K	G	T	G	C	V	K	I	T	P	A	H	D	F	N	D	Y	E	V	G	K	R	H	A	L	P	M	I	N	I	L	T	F	D	G	D	I	R	E	S	A	Q	V	F	D	T	K	G	N	E
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		R	Y	R	H	L	L	G	K	R	A	R	I	P	L	T	E	V	W	I	P	I	L	A	D	P	A	V	E	K	D	F	G	T	G	A	L	K	V	T	P	A	H	D	P	L	D	Y	E	I	G	E	R	H	G	L	K	P	V	S	V	I	N	L	E	G	R	M	E	G	E	R	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	T		S		S	S						T	T	S										T	T			T	T	S	S	S	S						T	T	T																		S	B		T	T	S		B			S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	V	Y	S	S	E	I	P	A	E	F	Q	K	L	E	R	F	A	A	R	K	A	V	V	A	A	V	D	A	L	G	L	L	E	E	I	K	P	H	D	L	T	V	P	Y	G	D	R	G	G	V	V	I	E	P	M	L	T	D	Q	W	Y	V	R	A	D	V	L	A	K	P	A	V	E	A	V	E	N	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	V	P	E	A	L	R	G	L	D	R	F	E	A	R	R	K	A	V	E	L	F	R	E	A	G	H	L	V	K	E	E	D	Y	T	I	A	L	A	T	C	S	R	C	G	T	P	I	E	Y	A	I	F	P	Q	W	W	L	R	M	R	P	L	A	E	E	V	L	K	G	L	R	R	G
Template Known Secondary structure		.	.	.	.	.	.	.	S		T	T	T	S	S	S		S	S	T	T					T					T	T	T																T	T	T			B																											T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.				.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		D	I	Q	F	V	P	K	Q	Y	E	N	M	Y	F	S	W	M	R	D	I	Q	D	W	C	I	S	R	Q	L	W	W	G	H	R	I	P	A	W	Y	D	E	A	G	N	V	Y	V	G	R	N	E	D	E	.	.	.	V	R	K	E	N	N	L	G	A	D	V	V	L	R	Q	D	E	D	V	L	D	T	W	F
Query Conservation																																																							.	.	.
Alig confidence																																																							.	.	.
Template Conservation
Template Sequence		D	I	A	F	V	P	E	R	W	K	K	V	N	M	D	W	L	E	N	V	K	D	W	N	I	S	R	Q	L	W	W	G	H	Q	I	P	A	W	Y	C	E	D	C	Q	A	V	N	V	P	R	P	E	R	Y	L	E	D	P	T	S	C	E	A	C	G	S	P	R	L	K	R	D	E	D	V	F	D	T	W	F
Template Known Secondary structure			S			S	S	S	T											T											S	S	S		B							T	T	T								G	G	G	T	T	S				S		T	T	T			S								B
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	A	L	W	T	F	S	T	L	G	W	P	E	N	T	D	A	L	R	Q	F	H	P	T	S	V	M	V	S	G	F	D	I	I	F	F	W	I	A	R	M	I	M	M	T	M	H	F	I	K	D	E	N	G	K	P	Q	V	P	F	H	T	V	Y	M	T	G	L	I	R	D	D	E	G	Q	K	M	S	K
Query Conservation
Alig confidence																																																					.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		S	S	A	L	W	P	L	S	T	L	G	W	P	E	E	T	E	D	L	K	A	F	Y	P	G	D	V	L	V	T	G	Y	D	I	L	F	L	W	V	S	R	M	E	V	S	G	Y	H	F	M	G	.	.	.	.	.	.	E	R	P	F	K	T	V	L	L	H	G	L	V	L	D	E	K	G	Q	K	M	S	K
Template Known Secondary structure				T	S		T	T	G	G	G	T	T	T	T	T		S					S		S								G	G	G	T	T	T	T										T	T	S	S	.	.	.	.	.	.	S		S													T	T	S		B			T
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.							.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	G	N	V	I	D	P	L	D	M	V	D	G	I	S	L	P	E	L	L	E	K	R	T	G	N	M	M	Q	P	Q	L	A	D	K	I	R	K	R	T	E	K	Q	F	P	N	G	I	E	P	H	G	T	D	A	L	R	F	T	L	A	A	L	A	S	T	G	R	D	I	N	W	D	M	K	R	L	E	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	G	N	V	I	D	P	L	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	R	Y	G	A	D	A	L	R	F	A	L	I	Y	L	A	T	G	G	Q	D	I	R	L	D	L	R	W	L	E	M
Template Known Secondary structure		T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T															T	T							T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.																																						.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	N	F	C	N	K	L	W	N	A	S	R	F	V	L	M	N	T	E	G	Q	D	C	G	F	N	G	G	E	M	T	L	S	L	A	D	R	W	I	L	A	E	F	N	Q	T	I	K	A	Y	R	E	A	L	D	S	F	R	F	D	I	A	A	G	I	L	Y	E	F	T	W	N	Q	F	C	D	W	Y	L
Query Conservation
Alig confidence																							.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		A	R	N	F	A	N	K	L	Y	N	A	A	R	F	V	L	L	S	R	E	G	.	.	.	.	F	Q	A	K	E	D	T	P	T	L	A	D	R	F	M	R	S	R	L	S	R	G	V	E	E	I	T	A	L	Y	E	A	L	D	L	A	Q	A	A	R	E	V	Y	E	L	V	W	S	E	F	C	D	W	Y	L
Template Known Secondary structure																					T	T	.	.	.	.					B																											T	T																			T	T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.					.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
		718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	T	K	P	V	M	N	G	G	T	E	A	E	L	R	G	T	R	H	T	L	V	T	V	L	E	G	L	L	R	L	A	H	P	I	I	P	F	I	T	E	T	I	W	Q	R	V	K	V	L	C	G	I	T	A	D	T	I	M	L	Q	P	F	P	Q	Y	D	A	S	Q	V	D	E	A	A	L	A	D	T
Query Conservation
Alig confidence														.	.	.	.																																		.	.	.	.	.															.	.
Template Conservation														.	.	.	.																																		.	.	.	.	.															.	.
Template Sequence		E	A	A	K	P	A	L	K	A	G	N	A	.	.	.	.	H	T	L	R	T	L	E	E	V	L	A	V	L	L	K	L	L	H	P	M	M	P	F	L	T	S	E	L	Y	Q	A	L	T	.	.	.	.	.	G	K	E	E	L	A	L	E	A	W	P	E	P	G	.	.	G	R	D	E	E	A	E	R	A	F
Template Known Secondary structure										T	T	B		.	.	.	.																		T	T	T	S													.	.	.	.	.			S		G	G	G	S							.	.
Template Predicted Secondary structure														.	.	.	.																																		.	.	.	.	.															.	.
Template SS confidence
		651	.	.	.	.	.	.	.	.	660	.	.					.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.						.	.	.	.	700	.	.	.	.	.	.	.	.	.			710	.	.	.	.	.	.	.	.	.
		798	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	L	K	Q	A	I	V	A	V	R	N	I	R	A	E	M	N	I	A	P	G	K	P	L	E	L	L	L	R	G	C	S	A	D	A	E	R	R	V	N	E	N	R	G	F	L	Q	T	L	A	R	L	E	S	I	T	V	L	P	A	D	D	K	G	P	V	S	V	T	K	I	I	D	G	A	E	L	L	I
Query Conservation
Alig confidence																																					.	.	.	.																				.	.	.	.	.
Template Conservation																																					.	.	.	.																				.	.	.	.	.
Template Sequence		E	A	L	K	Q	A	V	T	A	V	R	A	L	K	A	E	A	G	L	P	P	A	Q	E	V	R	V	Y	L	E	G	E	T	A	P	.	.	.	.	V	E	E	N	L	E	V	F	R	F	L	S	R	A	D	L	L	P	E	.	.	.	.	.	R	P	A	K	A	L	V	K	A	M	P	R	V	T	A	R	M
Template Known Secondary structure																			T			T	T	S									S				.	.	.	.				T															S	.	.	.	.	.			S	S							S	S
Template Predicted Secondary structure																																					.	.	.	.																				.	.	.	.	.
Template SS confidence
		720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.					.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.						.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
		878	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	A	G	L	I	N	K	E	D	E	L	A	R	L	A	K	E	V	A	K	I	E	G	E	I	S	R	I	E	N	K	L	A	N	E	G	F	V	A	R	A	P	E	A	V	I	A	K	E	R	E	K	L	E	G	Y	A	E	A	K	A	K	L	I	E	Q	Q	A	V	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	E	G	L	L	D	V	E	E	W	R	R	R	Q	E	K	R	L	K	E	L	L	A	L	A	E	R	S	Q	R	K	L	A	S	P	G	F	R	E	K	A	P	K	E	V	V	E	A	E	E	A	R	L	K	E	N	L	E	Q	A	E	R	I	R	E	A	L	S	Q	I	G
Template Known Secondary structure					S	S																														S	T	T					S
Template Predicted Secondary structure
Template SS confidence
		791	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.