Job Description P52037 Confidence 98.33% Date Thu Jan 5 12:04:56 GMT 2012 Rank 260 Aligned Residues 182 % Identity 14% Template c2zklA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus Resolution 2.61 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	I	A	L	V	T	G	G	S	R	G	I	G	R	A	T	A	L	L	L	A	Q	E	G	Y	T	V	A	V	N	Y	Q	Q	N	L	H	A	A	Q	E	V	M	N	L	I	T	Q	A	G	G	K	A	F	V	L	Q	A	D	I	S	D	E	N	Q	V	V	A	M	F	T	A	I	D	Q	H	D	E	P	L
Query Conservation
Alig confidence				.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	N	.	I	V	I	T	G	A	K	G	F	V	G	K	N	L	K	A	D	L	T	S	T	T	D	H	H	I	F	E	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	T	K	E	E	E	L	E	S	A	L	L	K	A
Template Known Secondary structure				.					T	T	T	S																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure				.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																																	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	V	N	N	A	G	I	L	F	T	Q	C	T	V	E	N	L	T	A	E	R	I	N	R	V	L	S	T	N	V	T	G	Y	F	L	C	C	R	E	A	V	K	R	M	A	L	K	N	G	G	S	G	G	A	I	V	N	V	S	S	V	A	S	R	L	G	S	P	G	E	Y	V	D	Y	A	A	S	K
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Sequence		D	F	I	V	H	L	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	S	L	G	N	V	S	Y	L	D	H	V	L	D	I	L	T	R	N	T	K	K	P	A	I	L	L	S	S	S	I	Q	.	.	.	.	.	A	T	Q	D	N	P	Y	G	E	S	K
Template Known Secondary structure		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S													T	T		S	S										G	G	.	.	.	.	.	G	T	S		S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template SS confidence
		48	.	50	.	.	.	.	.																								.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.									.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.															.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.															.	.	.	.	.	.	.	.
Query Sequence		G	A	I	D	T	L	T	T	G	L	S	L	E	V	A	A	Q	G	I	R	V	N	C	V	R	P	G	F	I	Y	T	E	M	H	A	S	G	G	E	.	.	.	P	G	R	V	D	R	V	K	S	N	I	P	M	Q	.	.	.	.	.	.	.	.	R	G	G	Q	A	E	E	V	A	Q	A	I	V	W	L	L
Query Conservation																																									.	.	.															.	.	.	.	.	.	.	.
Alig confidence																.	.	.																							.	.	.															.	.	.	.	.	.	.	.
Template Conservation																.	.	.
Template Sequence		L	Q	G	E	Q	L	L	R	E	Y	A	E	E	Y	.	.	.	G	N	T	V	Y	I	Y	R	W	P	N	L	F	G	K	W	C	K	P	N	Y	N	S	V	I	A	T	F	C	Y	K	I	A	R	N	E	E	I	Q	V	N	D	R	N	V	E	L	T	L	N	Y	V	D	D	I	V	A	E	I	K	R	A	I
Template Known Secondary structure																.	.	.															T	T			T	T	T	T											T	T	T						S		T	T																			T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	K	A	S	Y	V	T	G	S	F	I	D	L	A	G	G	K
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		E	.	G	T	P	T	I	E	N	G	V	P	T	V	P	N	V	F
Template Known Secondary structure		T	.	T						T	T					S
Template Predicted Secondary structure			.
Template SS confidence
		185		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions