Phyre 2 alignment of P00363 with c3d1cA

Job Description P00363
Confidence 99.23% Date Thu Jan 5 10:56:34 GMT 2012

Rank 175 Aligned Residues 329

% Identity 15% Template c3d1cA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:flavin-containing putative monooxygenase; PDBTitle: crystal structure of flavin-containing putative monooxygenase2 (np_373108.1) from staphylococcus aureus mu50 at 2.40 a resolution

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q	D	V	V	D
Query Conservation
Alig confidence																									.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	H	H	K	V	A	I	I	G	A	G	A	A	G	I	G	X	A	I	T	L	K	D	F	G	.	.	I	T	D	V	I	I	L	E	K	G	T	V	G	H	S	F	K	H	W	P	K	S	T	R	T	I	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S													T	T	.	.									S	S	S	T	T					T	S		T	T		B		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.

	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L	D	I	L	V	D
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	T	S	N	G	F	G	X	P	D	X	N	A	I	S	X	D	T	S	P	A	F	T	F	N	E	E	H	I	S	G	E	T	Y	A	E	Y	L	Q	V	V	A	N	H	Y	E	L	N	I	F	E	N	T	V	V	T	N	I	S	A	D
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G	T				T	T		S	S	T	T										S	S		B															T	T						S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.

	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H	P	T	G	L	P	G	S	G	I	L	M
Query Conservation
Alig confidence												.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Sequence	D	A	Y	Y	T	I	A	T	T	T	E	.	.	.	.	.	.	.	T	Y	H	A	D	Y	I	F	V	A	T	G	D	Y	N	F	P	.	.	.	.	.	.	.	K	K	P	F	K	Y	G	I	H	Y	S	E	I	E	D	F	D	N	F	N	K	G	Q	Y	V	V	I	G	G	N	E	S	G	F	D	A	A	Y
Template Known Secondary structure	S	S	S						S	S		.	.	.	.	.	.	.													S	T	T	S	B	.	.	.	.	.	.	.				S	S	S				G	G	G		S		G	G	G	S		S	S								S
Template Predicted Secondary structure												.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
	117	.	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.								.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

	245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence	T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	T	P	R	G	D	V	V	Y	.	L	D	L	R	H	L	G	E	K
Query Conservation																																																																							.
Alig confidence																																																				.	.	.	.																.								.	.
Template Conservation																																																				.	.	.	.																								.	.
Template Sequence	Q	L	A	K	N	G	S	D	I	A	L	Y	T	S	P	S	V	R	L	S	P	Y	T	R	Q	R	L	G	N	V	I	K	Q	G	A	R	I	E	X	N	V	H	Y	T	V	K	D	I	D	F	N	.	.	.	.	N	G	Q	Y	H	I	S	F	D	S	G	Q	S	V	H	T	P	H	E	P	I	L	A	.	.
Template Known Secondary structure					T	T										T	T	S															T	T								S										.	.	.	.	T	T							S	S	S						S	S						.	.
Template Predicted Secondary structure																																																				.	.	.	.																								.	.
Template SS confidence
	183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.					.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

	324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	N	C	E	T	R	I	K	G	L	F	A	V	G	E	C	S	S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L	V	V	F
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	F	D	A	T	K	N	P	I	V	Q	Q	L	F	V	T	T	N	Q	D	I	K	L	T	T	H	D	E	S	T	R	Y	P	N	I	F	X	I	G	A	T	V	E	.	.	.	.	.	.	.	.	.	N	D	N	A	K	L	C	Y	I	Y	K
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B		G	G	G	S							S			T	T	S				B		T	T	S	B	B	S	S	S	T	T					S	T	T			.	.	.	.	.	.	.	.	.		S	S					S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Template SS confidence
																	267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310										.	.	.	.	.	.	.	.	.	320	.

	404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	R	L	A	G	E	Q	A	T	E	R	A	A	T	A	G	N	G	N	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F	R	A	R	F	A	V	L	A	H	L	L	T	Q	R	E	G	L	P	A	K
Template Known Secondary structure		G	G	G												T	T
Template Predicted Secondary structure
Template SS confidence
	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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