Job Description P00363 Confidence 99.94% Date Thu Jan 5 10:56:34 GMT 2012 Rank 29 Aligned Residues 356 % Identity 17% Template c3cp8C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: crystal structure of gida from chlorobium tepidum Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q	D	V	V	D	Y
Query Conservation
Alig confidence																									.	.															.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation																									.	.															.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	V	I	V	V	G	A	G	H	A	G	C	E	A	A	L	A	V	A	R	G	G	.	.	L	H	C	L	L	I	T	S	D	L	S	A	V	A	.	.	.	.	.	.	R	M	S	C	N	P	A	I	G	G	V	A	K	G	Q	I	T	R	E	I	D	A	L	G	G	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S													T	T	.	.								S		G	G	G	T	T	.	.	.	.	.	.			S	S		S					T	T												T		S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.															.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.							.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L	D	I	L	V	D	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.																							.
Template Conservation		.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.																							.
Template Sequence		.	.	.	.	.	.	.	M	G	K	A	I	D	A	T	G	I	Q	F	R	M	L	N	R	S	K	G	P	A	M	H	S	P	R	A	Q	A	D	.	.	.	.	.	.	.	.	.	K	T	Q	Y	S	L	Y	M	R	R	I	V	E	H	E	P	N	I	D	L	L	Q	.	D	T	V	I	G	V	S	A	N	S
Template Known Secondary structure		.	.	.	.	.	.	.																	S	S	S		T	T	T									.	.	.	.	.	.	.	.	.														T		T	T						.										T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.																							.
Template SS confidence
									65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.										.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.									200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.
Query Sequence		G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	.	.	.	.	.	.	.	.	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H	P	T	G	L
Query Conservation																																				.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																		.	.	.	.	.	.	.	.																					.
Template Conservation														.	.	.	.	.																																														.
Template Sequence		G	K	F	S	S	V	T	V	R	S	G	R	.	.	.	.	.	A	I	Q	A	K	A	A	I	L	A	C	G	T	F	L	N	G	L	I	H	I	G	M	D	H	F	P	G	G	R	S	T	A	E	P	P	V	E	G	L	T	E	S	L	A	.	S	L	G	F	S	F	G	R	L	K	T	G	T	P	P	R	I
Template Known Secondary structure		T								T	T	S		.	.	.	.	.												T	T		B	T						T	T						S	S	S	T	T	S			B		S							.		T	T
Template Predicted Secondary structure														.	.	.	.	.																																														.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.						140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.									.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.																																																							.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.																																																							.	.	.
Query Sequence		P	G	S	G	I	L	M	T	E	G	C	R	G	E	G	.	.	.	.	.	.	.	.	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	.	.	.
Query Conservation																	.	.	.	.	.	.	.	.																																																							.	.	.
Alig confidence																	.	.	.	.	.	.	.	.																																																							.	.	.
Template Conservation
Template Sequence		D	S	R	S	V	D	Y	T	I	V	T	E	Q	P	G	D	V	D	P	V	P	F	S	F	S	S	T	S	V	A	N	R	N	L	V	S	C	Y	L	T	K	T	T	E	K	T	H	D	I	L	R	T	G	F	D	R	S	P	L	F	T	G	C	P	S	I	E	D	K	I	S	R	F	P	D	K	S	S	H	H
Template Known Secondary structure			G	G	G	S		T	T	T	S							S	S				S	S	S	S					G	G	G																				T	T	T	T	T		T	T							S									S		S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
										307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.											.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	T	P	R	G	D	V	V	Y	L	D	L	R	H	L	G	E	K	K	L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	.	.	.	.	.	.	.	.	.	.	D	Q	N	C
Query Conservation		.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	F	L	E	P	E	G	T	D	T	V	E	M	Y	V	N	G	F	S	T	S	L	P	E	D	I	Q	I	A	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	I	P	G	L	E	E	A	K	M	I	R	P	G	Y	A	I	E	Y	D	F	F	H	P	W	Q	I	R	S	T	M
Template Known Secondary structure							S	S	T	T								T					S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	T	T		T	T																	G	G	G	B		T	T	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.																		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		369	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		E	T	.	R	I	K	G	L	F	A	V	G	E	C	S	S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L	V	V	F	G	R	L	A	G	E	Q	A	T	E	R	A	A	T	A	G	N	G	N	E	A	A	I	E	A
Query Conservation				.
Alig confidence				.															.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	R	P	V	E	N	L	F	F	A	G	Q	I	N	G	T	.	.	.	.	.	.	.	.	.	.	S	G	Y	E	E	A	A	A	Q	G	L	M	A	G	I	N	A	V	R	K	I	L	G	K	E	L	I	V	L	G	R	D	Q	A
Template Known Secondary structure		B	B	S	S	S	B	T					S	G	G	G	T	B	.	.	.	.	.	.	.	.	.	.																							T								T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370											.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.