Job Description P00363 Confidence 99.97% Date Thu Jan 5 10:56:34 GMT 2012 Rank 27 Aligned Residues 445 % Identity 17% Template c3cesB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme Resolution 2.41 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q	D	V	V	D
Query Conservation
Alig confidence																										.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	.	.	Q	Q	T	L	L	L	T	H	N	I	D	T	L	G	Q	M	S	C	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	G	G	I	G	K	G	H	L	V	K
Template Known Secondary structure				S							S													T	T	.	.								S		G	G	G	T	T			S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																										.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																							50	.	.	.	.	.	.	.	.	.	60	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L	D	I	L	V	D
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.																.
Template Conservation																																									.	.	.	.	.	.	.	.	.																.
Template Sequence		E	V	D	A	L	G	G	L	M	A	K	A	I	D	Q	A	G	I	Q	F	R	I	L	N	A	S	K	G	P	A	V	R	A	T	R	A	Q	A	D	.	.	.	.	.	.	.	.	.	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	.	P	N	L	M	I	F	Q	Q	A	V	E	D	L	I	V	E
Template Known Secondary structure						T	T		S																S	T	T	S		T	T	S									.	.	.	.	.	.	.	.	.														T		.	T	T														S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.																.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100										.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H	P	T	G	L	P	G	S	G	I	L	M
Query Conservation
Alig confidence															.	.	.	.	.																					.	.	.	.													.						.	.
Template Conservation															.	.	.	.	.																					.	.	.	.													.						.	.
Template Sequence		N	D	R	V	V	G	A	V	T	Q	M	G	L	.	.	.	.	.	K	F	R	A	K	A	V	V	L	T	V	G	T	F	L	D	G	K	I	H	.	.	.	.	I	G	S	I	P	L	S	R	R	L	R	E	.	L	P	L	R	V	.	.	G	R	L	K	T	G	T	P	P	R	I	D	A	R	T	I	D	F
Template Known Secondary structure		S	S	B							T	T	S		.	.	.	.	.					S							S	G	G	G						.	.	.	.													.	T	T				.	.													G	G	G	S		G
Template Predicted Secondary structure															.	.	.	.	.																					.	.	.	.													.						.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.														.	310	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	D
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.
Template Sequence		S	V	L	A	Q	Q	H	G	.	.	.	.	D	N	P	M	P	V	F	S	F	M	G	N	A	S	Q	H	P	Q	Q	V	P	C	Y	I	T	H	T	N	E	K	T	H	D	V	I	R	S	N	L	S	I	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	G	L	T	S	N	E	I
Template Known Secondary structure		G	G	S						.	.	.	.		S	S				S	S	T	T			G	G	G	S																									T					T	T	S		T	T										S		T	T
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220					.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.											.	.	.	370		.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.					.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.					.
Query Sequence		V	V	Y	L	D	L	R	H	L	G	E	K	K	L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	.	.	.	.	.	.	.	.	.	.	N	C	E	T	.	R	I	K	G	L	F	A	V	G	E
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.					.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.					.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	P	N	G	I	S	T	S	L	P	F	D	V	Q	M	Q	I	V	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	P	R	D	L	K	P	T	L	E	S	K	F	I	Q	G	L	F	F	A	G	Q
Template Known Secondary structure					T				S												T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T		T	T																	G	G	G	B		T	T	S	B	B	S	S	S	B	T					G	G
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.																		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		C	S	S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L	V	V	F	G	R	L	A	G	E	Q	A	T	E	R	A	A	T	A	G	N	G	N	E	A	A	I	E	A	Q	A	A	G	V	E	Q	R	L	K	D	L	V	N	Q	D	G	G	E	N	W	A	K	I	R	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence					.	.				.	.	.	.	.	.	.	.																																				.	.	.																				.	.	.	.	.	.	.
Template Conservation					.	.				.	.	.	.	.	.	.	.																																				.	.	.
Template Sequence		I	N	G	.	.	T	T	G	.	.	.	.	.	.	.	.	Y	E	E	A	A	A	Q	G	L	L	A	G	L	N	A	A	R	L	S	A	D	K	E	G	W	A	P	A	R	S	Q	A	Y	L	G	.	.	.	V	L	V	D	D	L	C	T	L	G	T	K	E	P	Y	R	M	F	T	S	R	A	E	Y	R	L
Template Known Secondary structure		G	G	T	.	.				.	.	.	.	.	.	.	.																				T	T								T	T	T					.	.	.										S	S				G	G	G						T	T	T	S
Template Predicted Secondary structure					.	.				.	.	.	.	.	.	.	.																																				.	.	.
Template SS confidence
		371	.	.			.	.	.									.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.				.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
								454	.	.	.	.	.	460	.	.	.		.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.											.
Query SS confidence		.	.	.	.	.	.											.
Query Sequence		.	.	.	.	.	.	D	E	M	G	L	A	M	E	E	G	.	C	G	I	Y	R	T	P	E	L	M	Q	K	T	I	D	K	L	A	E	L	Q	E	R	F	K	R	V	R	I	T	D	T	S	S	V	F	N	T	D	L	L	Y	T	I	E	L	G	H	G	L	N	V	A	E	C	M	A	H	S	A	M	A	R
Query Conservation		.	.	.	.	.	.											.
Alig confidence		.	.	.	.	.	.											.					.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	L	R	E	D	N	A	D	L	R	L	T	E	I	G	R	E	L	G	L	V	.	D	D	E	R	W	A	R	F	N	E	K	L	E	N	I	E	R	E	R	Q	R	L	K	S	T	W	V	T	P	S	A	E	A	A	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	H	L	T
Template Known Secondary structure		S			G	G	G													T			.																					T	T	T	S					S	S	S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S
Template Predicted Secondary structure																							.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.																	.	.	.	.	500
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	S	R	G	A	H	Q	R	L	D	E	G	C	T	E	R	D	D	V	N	F
Query Conservation
Alig confidence													.	.
Template Conservation													.	.
Template Sequence		A	P	L	S	R	E	A	S	G	E	D	.	.	L	L	R	R	P	E	M	T	Y
Template Known Secondary structure		S				S				T	T	S	.	.	S	S	S	S	T	T
Template Predicted Secondary structure													.	.
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.			.	.	.	.	.	.	.	.	520