Job Description P00363 Confidence 99.92% Date Thu Jan 5 10:56:34 GMT 2012 Rank 35 Aligned Residues 368 % Identity 20% Template c2zxiC_ PDB info PDB header:fad-binding protein Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: structure of aquifex aeolicus gida in the form ii crystal Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	T	F	Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q
Query Conservation
Alig confidence						.	.																							.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.																							.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	E	F	.	.	D	V	V	V	I	G	G	G	H	A	G	I	E	A	A	L	A	A	A	R	M	G	.	.	A	K	T	A	M	F	V	L	N	A	D	T	I	G	Q	M	S	C	N	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	G	I	A	K	G
Template Known Secondary structure		G	G			.	.	S						S	S													T	T	.	.								S		G	G	G	T	T				S		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure						.	.																							.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.			.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																							.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	V	D	Y	F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L	D
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.																									.
Template Conservation																																													.	.	.	.	.	.	.	.	.																									.
Template Sequence		I	V	V	R	E	I	D	A	L	G	G	E	M	G	K	A	I	D	Q	T	G	I	Q	F	K	M	L	N	T	R	K	G	K	A	V	Q	S	P	R	A	Q	A	D	.	.	.	.	.	.	.	.	.	K	K	R	Y	R	E	Y	M	K	K	V	C	E	N	Q	E	N	L	Y	I	K	Q	E	E	.	V	V	D
Template Known Secondary structure											T		S																S	T	T	S		G	G	G									.	.	.	.	.	.	.	.	.															S	T	T						S		.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.																									.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.										.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.								.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.
Query Sequence		I	L	V	D	D	G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	.	.	.	.	.	.	.	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H
Query Conservation																																						.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.														.	.	.	.	.	.	.																							.
Template Conservation																				.	.	.	.	.																																											.
Template Sequence		I	I	V	K	N	N	Q	V	V	G	V	R	T	N	L	G	V	E	.	.	.	.	.	Y	K	T	K	A	V	V	V	T	T	G	T	F	L	N	G	V	I	Y	I	G	D	K	M	I	P	G	G	R	L	G	E	P	R	S	E	G	L	S	D	F	Y	.	R	R	F	D	F	P	L	I	R	F	K	T	G	T
Template Known Secondary structure					S	S	S	B							T	T	S			.	.	.	.	.				S							T	T		B	T						T	T						S	B	T	T	B			B		T						.			T	T
Template Predicted Secondary structure																				.	.	.	.	.																																											.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260															.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	T	G	L	P	G	S	G	I	L	M	T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	R	L	D	K	R	T	I	D	F	S	A	L	E	V	A	P	G	D	D	P	P	P	K	F	S	F	W	T	E	P	V	G	S	Y	W	F	P	K	G	K	E	Q	V	N	C	W	I	T	Y	T	T	P	K	T	H	E	I	I	R	K	N	L	H	R	T	A	R	Y	C	P	S	I	E	D	K	I	V	K
Template Known Secondary structure							G	G	G				T	T	S							S	S		B		S		S	S	S	S	S	T	T		S	B			T	T																						T										S	T	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.									.	.	.
Predicted Secondary structure																																																																.	.						.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.						.	.	.	.	.	.	.	.
Query Sequence		R	K	G	N	T	I	S	T	P	R	G	D	V	V	Y	L	D	L	R	H	L	G	E	K	K	L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	.	.	I	E	T	D	Q	.	.	.	.	.	.	.	.	N	C	E
Query Conservation																																																																.	.						.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.														.	.						.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence		F	P	D	K	E	R	H	Q	I	F	L	E	P	E	G	L	D	T	I	E	I	Y	P	N	G	L	S	T	S	L	P	E	E	V	Q	W	E	M	Y	R	S	.	.	.	.	.	.	.	.	I	P	G	L	E	N	V	V	L	I	R	P	A	Y	A	I	E	Y	D	V	V	P	P	T	E	L	Y	P	T	L	E
Template Known Secondary structure			T	T		S									S		S	S								T					S										T	T	.	.	.	.	.	.	.	.	S	T	T		T	T																	G	G	G	B		T	T	S	B
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.									.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		T	.	R	I	K	G	L	F	A	V	G	E	C	S	S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L	V	V	F	G	R	L	A	G	E	Q	A	T	E	R	A	A	T	A	G	N	G	N	E	A	A	I	E	A
Query Conservation			.
Alig confidence			.															.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.
Template Sequence		T	K	K	I	R	G	L	F	H	A	G	N	F	N	G	T	.	.	.	.	.	.	.	.	.	.	T	G	Y	E	E	A	A	G	Q	G	I	V	A	G	I	N	A	A	L	R	A	F	G	K	E	P	I	Y	L	R	R	D	E	S
Template Known Secondary structure		B	S	S	S	B	T					G	G	G	G	T	B	.	.	.	.	.	.	.	.	.	.		S																				T	T								T	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.											.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.