Job Description P00363 Confidence 99.73% Date Thu Jan 5 10:56:34 GMT 2012 Rank 62 Aligned Residues 332 % Identity 12% Template c2qaeA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase Resolution 1.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q	D	V	V	D
Query Conservation
Alig confidence																										.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	D	V	V	V	I	G	G	G	P	G	G	Y	V	A	S	I	K	A	A	Q	L	G	.	.	M	K	T	A	C	V	E	K	R	G	A	L	G	G	T	C	L	N	V	G	C	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	K	A	L	L
Template Known Secondary structure											S													T	T	.	.								S	S	S	S	S	S							S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																											.	.	50	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L	D	I	L	V	D
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	T	H	L	Y	H	D	A	H	A	N	F	A	R	Y	G	L	M	G	G	E	G	V	T	M	D	S	A	K	M	Q	Q	Q	K	E	R	.	.	.	.	.	.	.	.	.	.	.	A	V	K	G	L	T	G	G	V	E	Y	L	F	K	K	N	K	V	T	Y	Y	K	G	E	G	S	F	E	T	A	H	S
Template Known Secondary structure													T					T				G	G	G															.	.	.	.	.	.	.	.	.	.	.																	T													T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90												.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H	P	T	G	L	P	G	S	G	I	L	M
Query Conservation
Alig confidence			.	.	.	.	.	.	.																															.	.	.	.
Template Conservation			.	.	.	.	.	.	.																															.	.	.	.
Template Sequence		I	.	.	.	.	.	.	.	R	V	N	G	L	D	G	K	Q	E	M	L	E	T	K	K	T	I	I	A	T	G	S	E	P	T	E	L	P	F	.	.	.	.	L	P	F	D	E	K	V	V	L	S	S	T	G	A	L	A	L	P	R	V	P	K	T	M	V	V	I	G	G	G	V	I	G	L	E	L	G	S
Template Known Secondary structure			.	.	.	.	.	.	.					T	T	S																					B	T	T	.	.	.	.	B				S	S	S									T		S	S			S								S
Template Predicted Secondary structure			.	.	.	.	.	.	.																															.	.	.	.
Template SS confidence
		123								.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	T	P	R	G	D	V	V	Y	L	D	L	R	H	L	G	E	K	K
Query Conservation
Alig confidence																																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		V	W	A	R	L	G	A	E	V	T	V	V	E	F	A	P	R	C	A	P	T	L	D	E	D	V	T	N	A	L	V	G	A	L	A	K	N	E	K	M	K	F	M	T	S	T	K	V	V	G	G	T	N	N	G	D	S	V	S	L	E	V	E	G	K	R	E	T	V	T	C	E	A	L	L	V	S	.	.	.
Template Known Secondary structure						T	T								S	S	S	S	S	S	T	T	S																T							S										S	S	S															S						.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	.	.	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	N	C	E	T	R	I	K	G	L	F	A	V	G	E	C	S	S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L	V	V
Query Conservation																										.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.																																					.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	R	R	P	F	T	G	G	L	G	L	D	K	I	N	V	A	K	N	E	R	G	F	V	K	I	G	D	H	F	E	T	S	I	P	D	V	Y	A	I	G	D	V	V	D	K	.	.	.	.	.	.	.	.	G	P	M	L	A	H	K	A	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T	S						T			B		T	T	S		B				T	T	S	B		S	S	T	T					G	G	G	B	S	S	.	.	.	.	.	.	.	.	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.
Template SS confidence
																	272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.									.	320	.	.	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	R	L	A	G	E	Q	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	V	A	C	A	E	I	L	A
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions