 |
Job Description | P00363 | Confidence | 73.51% | Date | Thu Jan 5 10:56:34 GMT 2012 |
Rank | 484 | Aligned Residues | 29 |
% Identity | 17% | Template | c2q41D_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:spermidine synthase 1; |
PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820
|
Resolution | 2.70 Å |
|
  |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | L | A | I | V | G | A | G | G | A | G | L | R | A | A | I | A | A | A | Q | A | N | P | N | A | K | I | A | L | I | S |
Query Conservation |   |
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|   |
|   |
|   |   |   | . | . |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|
Template Sequence |   |
K | V | L | V | I | G | G | G | D | G | G | V | L | . |
. |
R | E | V | A | R | H | A | S | I | E | Q | I | D | X | C | E |
Template Known Secondary structure |   |
 |  |  |  |  | S |
| S | S | S |  |  |  | . | . |  |  |  | T | T |
| T | T |
|
|  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  | . | . |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
123 | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
. | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|