Job Description P00363 Confidence 99.60% Date Thu Jan 5 10:56:34 GMT 2012 Rank 110 Aligned Residues 300 % Identity 12% Template c2gr2A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin reductase; PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form) Resolution 1.85 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q	D	V	V
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	A	P	V	V	V	L	G	A	G	L	A	S	V	S	F	V	A	E	L	R	Q	A	G	Y	Q	G	L	I	T	V	V	G	D	E	A	E	R	P	Y	D	R	P	P	L	S	K	D	F	M	A	H	G	D	A	E	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S							S														T			S							S	S		S			B		S	G	G	G	G	T								G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L	D	I	L	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	D	C	K	R	A	P	E	V	E	W	L	L	G	V	T	A	Q	S	F	D	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B				T	T	S		S						T								T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																											65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H	P	T	G	L	P	G	S	G	I	L
Query Conservation
Alig confidence									.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.
Template Sequence		Q	A	H	T	V	A	L	.	.	.	.	.	.	S	D	G	R	T	L	P	Y	G	T	L	V	L	A	T	G	A	A	P	R	A	L	P	T	L	Q	G	A	T	M	P	V	H	T	L	R	T	L	E	D	A	R	R	I	Q	A	G	L	R	P	Q	S	R	L	L	I	V	G	G	G	V	I	G	L	E	L	A
Template Known Secondary structure		T	T	T					.	.	.	.	.	.	T	T	S						S														G	G	G	T	T		S	S						S	S									T	T			T	T									S
Template Predicted Secondary structure									.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.							.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	T	P	R	G	D	V	V	Y	L	D	L	R	H	L	G	E	K
Query Conservation
Alig confidence																																																						.	.	.	.	.																						.	.
Template Conservation																																																						.	.	.	.	.																						.	.
Template Sequence		A	T	A	R	T	A	G	V	H	V	S	L	V	E	T	Q	P	R	L	M	S	R	A	A	P	A	T	L	A	D	F	V	A	R	Y	H	A	A	Q	G	V	D	L	R	F	E	R	S	V	T	G	S	.	.	.	.	.	V	D	G	V	V	L	L	D	D	G	T	R	I	A	A	D	M	V	V	V	G	.	.
Template Known Secondary structure							T	T								S	S	S	S	S		T	T	T	S															T	T						T							.	.	.	.	.		T	T					T	T	S						S						.	.
Template Predicted Secondary structure																																																						.	.	.	.	.																						.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.						.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		K	L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	N	C	E	T	R	I	K	G	L	F	A	V	G	E	C	S	S	.	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L	V	V
Query Conservation																																																														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.																									.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	V	L	A	N	D	A	L	A	R	A	A	G	L	A	C	D	.	.	D	G	I	F	V	D	A	Y	G	R	T	T	C	P	D	V	Y	A	L	G	D	V	T	R	Q	R	N	P	L	S	G	R	F	E	R	I	E	T	W	S	N	A	Q	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S													T			B	S	.	.	S	S					T	T		B		S	S	T	T					G	G	G						T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
																		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	R	L	A	G	E	Q	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	I	A	V	A	R	H	L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions