Job Description P00363 Confidence 100.00% Date Thu Jan 5 10:56:34 GMT 2012 Rank 20 Aligned Residues 372 % Identity 15% Template c2gqfA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0933; PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	F	Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q	D
Query Conservation
Alig confidence																													.	.																																								.	.	.	.	.	.	.	.	.
Template Conservation																													.	.																																								.	.	.	.	.	.	.	.	.
Template Sequence		X	S	Q	Y	S	E	N	I	I	I	G	A	G	A	A	G	L	F	C	A	A	Q	L	A	K	L	G	.	.	K	S	V	T	V	F	D	N	G	K	K	I	G	R	K	I	L	X	S	G	G	G	F	C	N	F	T	N	L	E	V	T	P	A	H	Y	L	S	Q	.	.	.	.	.	.	.	.	.	N	P	H
Template Known Secondary structure							S							S													T	T	.	.								S	S	S	S	S							G	G	G	G	T						S	S			G	G	G				S	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																													.	.																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.										.	.	.
		82	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		V	V	D	Y	F	V	H	H	C	.	.	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L
Query Conservation											.	.
Alig confidence											.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	K	S	A	L	A	R	Y	T	N	W	D	F	I	S	L	V	A	E	Q	G	I	T	Y	H	E	K	E	L	G	Q	L	F	C	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	E	Q	I	V	E	X	L	K	S	E	C	D	K	Y	G	A	K	I	L	L	R	S	E	V	S
Template Known Secondary structure		S	T							S												T	T							S	T	T					T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T															T						S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	L	V	D	D	G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H	P	T	G	L	P	G
Query Conservation
Alig confidence																					.	.	.																	.	.	.	.	.	.
Template Conservation																					.	.	.																	.	.	.	.	.	.
Template Sequence		Q	V	E	R	I	Q	N	D	E	K	V	R	F	V	L	Q	V	N	S	.	.	.	T	Q	W	Q	C	K	N	L	I	V	A	T	G	G	L	S	.	.	.	.	.	.	X	P	G	L	G	A	T	P	F	G	Y	Q	I	A	E	Q	F	G	I	P	V	I	P	P	R	A	S	L	V	P	F	T	Y	R	E	T
Template Known Secondary structure								S		S	S								T	T	.	.	.						S									S	S	.	.	.	.	.	.		G	G	G	T			S									T	T										S							G	G
Template Predicted Secondary structure																					.	.	.																	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270							.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		S	G	I	L	M	T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	.	.	.	.	.	.	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	T	P	R	G	D	V	V
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	F	L	T	A	L	S	G	I	S	L	P	V	T	I	T	A	L	C	G	K	S	F	Y	N	Q	L	L	F	T	H	R	G	I	S	G	P	A	V	L	Q	I	S	N	Y	W	Q	P	T	E	S	V	E	I	D	L	L	P	N	H	N	V	E	E	E	I	N	Q	A	K	Q	S	S	P	K	Q	X	L	K
Template Known Secondary structure		G	G	G	G	G	G	G	T	T										T	T	S											S	S				S							T	T	T			T	T							S		S	S	S														T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.																330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.						.	.	.	370	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Query Sequence		Y	L	D	L	R	H	L	G	E	K	K	L	H	E	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	.	.	.	.	.	N	C	E	T	R	I	K
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation
Template Sequence		T	I	L	V	R	L	L	P	K	K	L	V	E	L	W	I	E	Q	G	I	V	Q	D	E	V	I	A	N	I	S	K	V	R	V	K	N	L	V	D	F	I	H	H	W	E	F	T	P	N	G	T	E	G	Y	R	T	A	E	V	T	X	G	G	V	D	T	K	V	I	S	S	K	T	X	E	S	N	Q	V	S
Template Known Secondary structure					T	T	T	S											T	T	S	S				B	G	G	G																					S					T	T	T		S								G	G	G	B		T	T	T		B	B	S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	F	A	V	G	E	C	S	S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L	V	V	F	G	R	L	A	G	E	Q	A	T	E
Query Conservation
Alig confidence												.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		G	L	Y	F	I	G	E	V	L	D	.	.	.	.	V	T	G	W	L	G	G	Y	N	F	Q	W	A	W	S	S	A	Y	A	C	A	L	S	I	S	R
Template Known Secondary structure		T					G	G	G	B	S	.	.	.	.					T	T	T																			T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.					.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400