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Job DescriptionP00363
Confidence100.00%DateThu Jan 5 10:56:34 GMT 2012
Rank4Aligned Residues585
% Identity38%Templatec2bs3A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a; PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes
Resolution2.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50........ .60.........70.....
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Query Sequence  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQ. . . . . DHDSFEYHFHDTVAGGD
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Template Sequence  MKVQYCDSLVIGGGLAGLRAAVATQQKG. . LSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSD
Template Known Secondary structure 


S

STTT..


SS
GGGSGGGG

S





SGGGTT

TT
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   1........10.........20........ .30.........40.........50.........60.........70........
 
   76...80.........90.........100.........110 .........120.........130....
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Query Sequence  WLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDG. . . . . . . . . . . . . . . . . . . . . SVNVRRFGGMKIERTWFAADKTGF
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Template Sequence  WGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGH
Template Known Secondary structure  T
S
TT



B

S


SS



GGGTTSB

B

TT
SS


STT
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   7980.........90.........100.........110.........120.........130.........140.........150........
 
   135....140.........150.........160.........170.........180.........190.........200.........210....
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Query Sequence  HMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGM
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Template Sequence  TMLFAVANECLKL. GVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT
Template Known Secondary structure  .T

STTTTT


S




GGGSSSBSS
TT
S
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   159160.........170. ........180.........190.........200.........210.........220.........230.......
 
   215....220. ........230.........240.........250.........260.........270.........280.........290...
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Query Sequence  GMALSHG. VPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQ
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Template Sequence  AIALETGIAQLGNMEAVQFHPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEP. . . . . . . . . . . EKKELASRDVVSR
Template Known Secondary structure  TTSSS

TT
S
BBTTT

B

TT

TTS
B

T...........TTGGGS
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   238.240.........250.........260.........270.........280.........290... ......300......
 
   294.....300.........310.........320.........330.........340.........350.........360.........370...
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Query Sequence  AFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIK
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Template Sequence  RMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRGEAKLK
Template Known Secondary structure  TTTSB

TT

B
GGG

TS
S
TTTS






TTSB
SSB
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   307..310.........320.........330.........340.........350.........360.........370.........380......
 
   374.....380.........390.........400.........410.........420 .........430.........440.........450..
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Query Sequence  GLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGN. GNEAAIEAQAAGVEQRLKDLVNQDGGENWAKI
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Template Sequence  GLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKI
Template Known Secondary structure  T
GGG

SSTTS

TTT









B
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   387..390.........400.........410.........420.........430.........440.........450.........460......
 
   453......460.........470.........480.........490.........500.........510.........520.........530..
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Query Sequence  RDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGA
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Template Sequence  KNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRGA
Template Known Secondary structure  SSSSB
TTB

S


SSS


S
BTT
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   467..470.........480.........490.........500.........510.........520.........530.........540......
 
   533......540.........550...... ... 560.........570.. .......580.........590.........600.
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Query Sequence  HQRLDEGCTERDDVNFLKHTLAFR. DAD. GTTRLEYSDVKIT. . TLPPAKRVYGGEADAADKAEAANKKEKAN
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Template Sequence  HNRED. . YPKRDDINWLNRTLASWPNPEQTLPTLEYEALDVNEMEIAPGYRGYGAKGNYIENPLSVKRQEEID
Template Known Secondary structure  B
BTT..B
STTT




TT
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GGG
SS
S


SSS
TT


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   547..550. ........560.........570.........580.........590.........600.........610.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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