Job Description P00363 Confidence 99.49% Date Thu Jan 5 10:56:34 GMT 2012 Rank 134 Aligned Residues 324 % Identity 15% Template c1yvvB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase, flavin-containing; PDBTitle: x-ray structurure of p. syringae q888a4 oxidoreductase at2 resolution 2.5a. northeast structural genomics consortium3 target psr10. Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	.	.	.	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q	D
Query Conservation																																										.	.	.
Alig confidence																										.	.															.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	P	I	A	I	I	G	T	G	I	A	G	L	S	A	A	Q	A	L	T	A	A	G	.	.	H	Q	V	H	L	F	D	K	S	R	G	S	G	G	R	X	S	S	K	R	S	D	A	G	A	L	D	X	G	A	Q	Y	F	T	A	R	D	R	R	F	A	T	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S													T	T	.	.								S	S	S	S	S		G	G	G						T	T	S					S				B				S						.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	D	Y	F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L	D	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	A	V	K	Q	W	Q	A	Q	G	H	V	A	E	W	T	P	L	L	Y	N	F	H	A	G	R	L	S	P	S	P	D	E	Q	V	R	W	V	G	K	P	G	X	S	A	I	T	R	A	X	R	.	.	.	.	.	G	D	X	P	V	S	F	S	C	R	I	T	E	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.									T	S												S	S	S							S	S	S						S	S	S	T	T								.	.	.	.	.	T	T						S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.
Template SS confidence
													68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	D	D	G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H	P	T	G	L	P	G	S	G
Query Conservation
Alig confidence												.	.	.	.	.																								.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.																								.	.	.	.	.	.	.
Template Sequence		F	R	G	E	E	H	W	N	L	L	.	.	.	.	.	D	A	E	G	Q	N	H	G	P	F	S	H	V	I	I	A	T	P	A	P	Q	A	S	.	.	.	.	.	.	.	T	L	L	A	A	A	P	K	L	A	S	V	V	A	G	V	K	X	D	P	T	W	A	V	A	L	A	F	E	T	P	L	Q	T	P
Template Known Secondary structure					S	S						.	.	.	.	.		T	T	S							S						S						G	.	.	.	.	.	.	.	G	G	G	T	T									T	T														S	S			S		S
Template Predicted Secondary structure												.	.	.	.	.																								.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.						.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.								.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	M	T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	T	P	R	G	D	V	V	Y	L	D	L	R	H	L	G
Query Conservation
Alig confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	Q	G	C	F	V	Q	D	S	P	L	D	W	L	A	R	N	R	S	K	P	E	R	D	D	T	L	D	T	W	I	L	H	A	T	S	Q	W	S	R	Q	N	L	D	A	S	R	E	Q	V	I	E	H	L	H	G	A	F	A	E	L	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S	S	S							G	G	G	S	T	T				S	S															T	T	T																T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	K	L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	N	C	E	T	R	I	K	G	L	F	A	V	G	E	C	S	S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	T	X	P	A	P	V	F	S	L	A	H	R	W	L	Y	A	R	P	A	G	A	H	E	W	G	A	L	S	D	A	D	L	G	I	Y	V	C	G	D	W	C	L	.	.	.	.	.	.	.	.	.	.	S	G	R	V	E	G	A	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						S													S	S					S					T	T	T	T						G	G	G	T	.	.	.	.	.	.	.	.	.	.	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.											.	.	.	.	310	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	G	R	L	A	G	E	Q	A	T	E	R	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	G	Q	E	A	A	R	R	L	L	E	H	L	Q
Template Known Secondary structure															T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions