Job Description P00363 Confidence 100.00% Date Thu Jan 5 10:56:34 GMT 2012 Rank 3 Aligned Residues 562 % Identity 42% Template c1yq4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone Resolution 2.33 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		Q	T	F	Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	.	.	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E
Query Conservation																																																											.	.
Alig confidence																													.	.																													.	.
Template Conservation																													.	.
Template Sequence		V	D	H	E	F	D	A	V	V	V	G	A	G	G	A	G	L	R	A	A	F	G	L	S	E	A	G	.	.	F	N	T	A	C	V	T	K	L	F	P	T	R	S	H	T	V	A	A	Q	G	G	I	N	A	A	L	G	N	M	E	D	D	N	W	R	W	H	F	Y	D	T	V	K	G	S	D	W	L	G	D
Template Known Secondary structure							S							S													T	T	.	.								S	S		G	G	G	S	G	G	G	G			S								S	S	S															T	T	T		S
Template Predicted Secondary structure																													.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.									.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.
Query Sequence		Q	D	V	V	D	Y	F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	.	.	.	.	.	.	.	.	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q
Query Conservation																																														.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.																									.
Template Conservation																																																																														.
Template Sequence		Q	D	A	I	H	Y	M	T	E	Q	A	P	A	A	V	I	E	L	E	N	Y	G	M	P	F	S	R	T	E	E	G	K	I	Y	Q	R	A	F	G	G	Q	S	L	Q	F	G	K	G	G	Q	A	H	R	C	C	C	V	A	D	R	T	G	H	S	L	L	H	T	L	Y	G	R	S	L	R	Y	.	D	T	S
Template Known Secondary structure																						T	T					B		T	T	S	S	B						T	T		B	S	G	G	G	T	S		B							S	T	T															T	T	S	.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	D	E	H	F	V	L	D	I	L	V	D	D	G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	F	V	E	Y	F	A	L	D	L	L	M	E	N	G	E	C	R	G	V	I	A	L	C	I	E	D	G	T	I	H	R	F	R	A	K	N	T	V	I	A	T	G	G	Y	G	R	T	Y	F	S	C	T	S	A	H	T	S	T	G	D	G	T	A	M	V	T	R	A	G	L	P	C	Q	D	L	E	F	V	Q
Template Known Secondary structure					T										T	T										T	T	T	T								S										G	G	G	S	S	S	B	S	S		T	T													T						T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	P	T	G	L	P	G	S	G	I	L	M	T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	T	P	R	G	D
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	H	P	T	G	I	Y	G	A	G	C	L	I	T	E	G	C	R	G	E	G	G	I	L	I	N	S	Q	G	E	R	F	M	E	R	Y	A	P	.	.	.	.	.	.	.	.	.	.	.	V	A	K	D	L	A	S	R	D	V	V	S	R	S	M	T	I	E	I	R	E	G	R	G	C	G	P	E	K	D	H
Template Known Secondary structure								T	T	T			B			T					T	T						T	T	S			T					S	T	.	.	.	.	.	.	.	.	.	.	.	T	T	G	G	G	S															T	T	T		B	T	T	T	T		B
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.												290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370										.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.
Query Sequence		V	V	Y	L	D	L	R	H	L	G	E	K	K	L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	N	C	E	T	.	.	.	.	.	.	.	.	.	R	I	K	G	L	F	A	V	G	E	C	S
Query Conservation																																																													.	.	.	.	.	.	.	.	.
Alig confidence		.																																																											.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	V	Y	L	Q	L	H	H	L	P	P	Q	Q	L	A	T	R	L	P	G	I	S	E	T	A	M	I	F	A	G	V	D	V	T	K	E	P	I	P	V	L	P	T	V	H	Y	N	M	G	G	I	P	T	N	Y	K	G	Q	V	I	T	H	V	N	G	E	D	K	V	V	P	G	L	Y	A	C	G	E	A	A
Template Known Secondary structure		.						T	T	S																								T	T	T	S												S		B			B		T	T	S							T	T												G	G	G
Template Predicted Secondary structure		.
Template SS confidence
			321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E	L	V	V	F	G	R	L	A	G	E	Q	A	T	E	R	A	A	T	A	G	N	G	N	E	A	A	I	E	A	Q	A	A	G	V	E	Q	R	L	K	D	L	V	N	Q	D	G	G	E	N	W	A	K	I	R	D	E	M	G	L	A	M	E	E
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		S	A	S	V	H	G	A	N	R	L	G	A	N	S	L	L	D	L	V	V	F	G	R	A	C	A	L	T	I	A	E	T	C	K	P	G	E	P	V	P	S	I	K	.	P	N	A	G	E	E	S	V	A	N	L	D	K	L	R	F	A	D	G	T	I	R	T	S	E	A	R	L	N	M	Q	K	T	M	Q	S
Template Known Secondary structure				S	S	S	T	T	S			T	T	S																						T	T								.	T	T	T	T														B	S	S
Template Predicted Secondary structure																																													.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.		.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	G	I	Y	R	T	P	E	L	M	Q	K	T	I	D	K	L	A	E	L	Q	E	R	F	K	R	V	R	I	T	D	T	S	S	V	F	N	T	D	L	L	Y	T	I	E	L	G	H	G	L	N	V	A	E	C	M	A	H	S	A	M	A	R	K	E	S	R	G	A	H	Q	R	L	D	E	G	C	T	E
Query Conservation
Alig confidence																																																																													.	.
Template Conservation																																																																													.	.
Template Sequence		H	A	A	V	F	R	T	G	S	I	L	Q	E	G	C	E	K	L	S	Q	I	Y	R	D	L	A	H	L	K	T	F	D	R	G	I	V	W	N	T	D	L	V	E	T	L	E	L	Q	N	L	M	L	C	A	L	Q	T	I	Y	G	A	E	A	R	K	E	S	R	G	A	H	A	R	E	D	.	.	Y	K	L
Template Known Secondary structure			S	S	S																				G	G	G	G								S	T	T																													S		B	T	T	B			T	T	.	.	B		S
Template Predicted Secondary structure																																																																													.	.
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.			.	.	.
		543	.	.																		.	.	.	.	550	.	.	.	.	.	.	.	.	.		560	.	.	.	.	.	.	.	.	.	570									.	.	.	.	.	.	.	.	.	580	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.												.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.												.	.	.	.	.	.	.	.
Query Sequence		R	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	F	L	K	H	T	L	A	F	R	D	A	D	.	G	T	T	R	L	E	Y	S	D	V	K	.	.	.	.	.	.	.	.	I	T	T	L	P	P	A	K	R	V	Y
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.												.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	D	E	F	D	Y	S	K	P	L	Q	G	Q	Q	K	R	P	F	E	E	H	W	R	K	H	T	L	S	Y	V	D	V	K	S	G	K	V	T	L	K	Y	R	P	V	I	D	R	T	L	N	E	E	D	C	S	S	V	P	P	A	I	R	S	Y
Template Known Secondary structure					S	S		T	T	S			T	T						G	G	G	S											T	T	T	T														S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.