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Job DescriptionP00363
Confidence99.61%DateThu Jan 5 10:56:34 GMT 2012
Rank107Aligned Residues317
% Identity17%Templatec1vdcA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:nadph dependent thioredoxin reductase; PDBTitle: structure of nadph dependent thioredoxin reductase
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40... ......50.........60.........70.......
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Query Sequence  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR. . . SHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWL
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Template Sequence  LETHNTRLCIVGSGPAAHTAAIYAARAE. . LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEG. . . . . . . . . . . . . . .
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STT..




SSBTTB
TT
GGGG
S

STT
TT
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   1........10.........20........ .30.........40.........50.........60...
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
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Query Sequence  CEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHF
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Template Sequence  . . . . . . ILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT. . . . . . . . . . . . . . . . . . . . . . . . . DSKAILADA
Template Known Secondary structure  ......TT






SSSS
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   5960.........70.........80.........90........ .100.......
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  VLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGL
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Template Sequence  VILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR
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BT
SSSSS

BTTTS
TTSGGGTTS

STTTSS
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   108.110.........120.........130.........140.........150.........160.........170.........180.......
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  PGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDL
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Template Sequence  ASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSD. . . . . . . . . . . . LKVSGLFFAIGHEPATKF
Template Known Secondary structure  S
T
TT
SSSSSSSTTT

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S
S
S
GG
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   182.......190.........200.........210.........220.........230. ........240.........
 
   318.320.........330.........340.........350.........360...... ...370.........380.........390......
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Query Sequence  RHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQ. NCETRIKGLFAVGECSSVGLHGANRLGSNS
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Template Sequence  LDG. . . . . . . . . . . . . . . . . . . . GVELDSD. . . . . . . . . . . . GYVVTKPGTTQTSVPGVFAAGDVQDK. . . . . . . . KYRQ
Template Known Secondary structure  GTT....................SS
B
TT............S
B


TTS
B
SSTT
GGGG
S........S


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   252.. .....260. ........270.........280....... ..290.
 
   397..400.........410.......
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Query Sequence  LAELVVFGRLAGEQATERAAT
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Template Sequence  AITAAGTGCMAALDAEHYLQE
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   295....300.........310.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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