Return to main results Retrieve Phyre Job Id

Job DescriptionP00363
Confidence99.77%DateThu Jan 5 10:56:34 GMT 2012
Rank51Aligned Residues244
% Identity27%Templatec1v59B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50. ......
Predicted Secondary structure 



















.......................



Query SS confidence 


















































. . . . . . . . . . . . . . . . . . . . . . .





Query Sequence  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEG. . . . . . . . . . . . . . . . . . . . . . . GSAAVA
Query Conservation 

    







 


 

  

  
    
 



    

 
  
 
.......................

    
Alig confidence 


.























..




















.......................





Template Conservation 
  . 








 


 

  
   
..  
 


     

                                    
Template Sequence  INK. SHDVVIIGGGPAGYVAAIKAAQLG. . FNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNG
Template Known Secondary structure  .

STT..

SSSSSSSSSGGGT


SS
Template Predicted Secondary structure 


.




..


























Template SS confidence 















































































   2.. .....10.........20........ .30.........40.........50.........60.........70........
 
   58.60.........70.........80.........90.........100.........110.........120.........130....
Predicted Secondary structure 



































...
Query SS confidence 












































































. . .
Query Sequence  QDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGF. . .
Query Conservation     
  
    
    
  
 
  

          
  
   

 
     
        
    
        
 ...
Alig confidence 











............




















































...
Template Conservation              ............                                                        
Template Sequence  DIKINVANFQKA. . . . . . . . . . . . KDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDV
Template Known Secondary structure 




............TT
SSSSS

SS
TT

SS
Template Predicted Secondary structure 




............


















Template SS confidence 















































































   7980.........90 .........100.........110.........120.........130.........140......
 
   135..
Predicted Secondary structure  .............................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HML
Query Conservation  .............................................................................   
Alig confidence  .............................................................................


Template Conservation         
                                                                        
Template Sequence  KNIIVATGSEVTPFPGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEV
Template Known Secondary structure 





TT


BTTT
TT
SS

S

STT

SSSSSSSSS
Template Predicted Secondary structure 





















































Template SS confidence 















































































   147..150.........160.........170.........180.........190.........200.........210.........220......
 
   138.140.........150.........160.... .....170.........180.........190.........200.........210......
Predicted Secondary structure 





.
































Query SS confidence 


























.



















































Query Sequence  HTLFQTSLQFPQIQRFDEHFVLDILVD. DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGM
Query Conservation    
        

 
        

  .     
 
      
    
 









        
     



   
Alig confidence 


























.





























......................
Template Conservation             

 
     
  
                          
 

 
 
......................
Template Sequence  AKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVG. . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
TTTTTTTTTTS
S
......................
Template Predicted Secondary structure 





















......................
Template SS confidence 















































































   227..230.........240.........250.........260.........270.........280....
 
   217..220.........230.........240.........250.........260.........270.........280.........290......
Predicted Secondary structure 














































Query SS confidence 















































































Query Sequence  ALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFW
Query Conservation 
  


 
  

  
  

       
        
  


  
 

                     
   
 
  

 
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   297..300.........310.........320.........330.........340.........350.........360.........370......
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  HEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLF
Query Conservation   
   
             
        
               
 
     
 
 
    
 


 

    
 




Alig confidence  ...............................



















............
















Template Conservation  ...............................  

                ............
 
 

    

 
 

Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RRPYIAGLGAEKIGLEVDKR. . . . . . . . . . . . GRLVIDDQFNSKFPHIK
Template Known Secondary structure  ...............................

TTS
T

B
TT............S
B


TTSB
SSTT
Template Predicted Secondary structure  ...............................














............











Template SS confidence 















































































   285....290.........300.... .....310.........320.
 
   377..380.........390.........400.........410...
Predicted Secondary structure 













Query SS confidence 




































Query Sequence  AVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATE
Query Conservation 



 
    


 



 

    
 
  

  

 
Alig confidence 






.........




















Template Conservation 
 

 
 .........       
   
  

  
 
Template Sequence  VVGDVTF. . . . . . . . . GPMLAHKAEEEGIAAVEMLKT
Template Known Secondary structure 
GGGSS.........S


Template Predicted Secondary structure 




.........





Template SS confidence 




































   322...... .330.........340.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions