Job Description P00363 Confidence 99.79% Date Thu Jan 5 10:56:34 GMT 2012 Rank 46 Aligned Residues 337 % Identity 15% Template c1ojtA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:surface protein; PDBTitle: structure of dihydrolipoamide dehydrogenase Resolution 2.75 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q	D	V	V	D
Query Conservation
Alig confidence																										.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Y	D	V	V	V	L	G	G	G	P	G	G	Y	S	A	A	F	A	A	A	D	E	G	.	.	L	K	V	A	I	V	E	R	Y	K	T	L	G	G	V	C	L	N	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	I	P	S	K	A	L
Template Known Secondary structure											S													T	T	.	.								S	S	S		S	S							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																												.	.	.	.	170	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L	D	I	L	V	D
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		L	H	N	A	A	V	I	D	E	V	R	H	L	A	A	N	G	I	K	Y	P	E	P	.	.	.	.	.	.	.	.	.	.	.	E	L	D	I	D	M	L	R	A	Y	K	D	G	V	V	S	R	L	T	G	G	L	A	G	M	A	K	S	R	.	K	V	D	V	I	Q	G	D	G	Q	F	L	D	P	H	H
Template Known Secondary structure														G	G	G	G	T							.	.	.	.	.	.	.	.	.	.	.																													T	.	T													T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.												.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
					165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	D	G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H	P	T	G	L	P	G	S	G
Query Conservation		.	.	.
Alig confidence		.	.	.																																																.	.	.	.	.
Template Conservation																																																				.	.	.	.	.
Template Sequence		L	E	V	S	L	T	A	G	D	A	Y	E	Q	A	A	P	T	G	E	K	K	I	V	A	F	K	N	C	I	I	A	A	G	S	R	V	T	K	L	P	F	I	P	E	D	P	R	I	I	D	.	.	.	.	.	S	S	G	A	L	A	L	K	E	V	P	G	K	L	L	I	I	G	G	G	I	I	G	L	E
Template Known Secondary structure												T	T																												S	S					T	T				.	.	.	.	.					T	T						S						S		S
Template Predicted Secondary structure																																																				.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290						.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	M	T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	T	P	R	G	D	V	V	Y	L	D	L	R	H	L	G
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		M	G	T	V	Y	S	T	L	G	S	R	L	D	V	V	E	M	M	D	G	L	M	Q	G	A	D	R	D	L	V	K	V	W	Q	K	Q	N	E	Y	R	F	D	N	I	M	V	N	T	K	T	V	A	V	E	P	K	E	D	G	V	Y	V	T	F	E	G	A	N	A	P	K	E	P	Q	R	Y	D	A	V	.
Template Known Secondary structure										T								S	S	S	S	S	S	T	T	S													G	G	G							S										T	T								S	S	S			S	S					S			.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		E	K	K	L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	.	.	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	N	C	E	T	R	I	K	G	L	F	A	V	G	E	C	S	S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E
Query Conservation																															.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																																		.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	A	A	G	R	A	P	N	G	K	L	I	S	A	E	K	A	G	V	A	V	T	D	R	G	F	I	E	V	D	K	Q	M	R	T	N	V	P	H	I	Y	A	I	G	D	I	V	G	.	.	.	.	.	.	.	.	.	Q	P	M	L	A	H	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										G	G	G	T	T	G	G	G	T	T					T	T	S						T	T	S	B		S	S	T	T					G	G	G	T		.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Template SS confidence
																	395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.										.	.	.	.	.	.	450
		400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	V	F	G	R	L	A	G	E	Q	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	H	E	G	H	V	A	A	E	N	C	A
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions