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Job DescriptionP00363
Confidence99.49%DateThu Jan 5 10:56:34 GMT 2012
Rank132Aligned Residues309
% Identity15%Templatec1nhqA_
PDB info PDB header:oxidoreductase (h2o2(a))Chain: A: PDB Molecule:nadh peroxidase; PDBTitle: crystallographic analyses of nadh peroxidase cys42ala and cys42ser2 mutants: active site structure, mechanistic implications, and an3 unusual environment of arg303
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQ
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Template Sequence  MK. . . . . VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSSGMQLYLEGKVKDVNS. . . . . . . . . . . . . . . . . .
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   1. .......10.........20.........30.........40.........50.......
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  DVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VRYMTGEKMESRGVNVFSNTEITA
Template Known Secondary structure  ........................................................SBS

TT
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   58.60.........70.........80.
 
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Query Sequence  ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNT. . . . NGGIVTGDGMGMALSHGVPLRDMEFVQYHPTG
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Template Sequence  IQPKEHQ. . . VTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSG
Template Known Secondary structure  TTTT...TTT


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STTTT
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   82...... .90.........100.........110.........120.........130.........140.........150........
 
   237..240.........250.........260.........270.........280.........290.........300.........310......
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Query Sequence  LPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLD
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Template Sequence  YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD. . GRVQKVVTDKNAYDAD
Template Known Secondary structure  TT

SSSSTTTTT

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   159160.........170.........180.........190.........200.........210.........220 .........230......
 
   317..320.........330.........340.........350.........360.........370.........380.........390... ..
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Query Sequence  LRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLG. SN
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Template Sequence  LVVVA. . . . . . . . . . . . . . . . . . VGVRPNTAWLKGTLE. LHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIA
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GGGTTTS
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   237..240. ........250...... ...260.........270.........280.........290.......
 
   396...400.........410..
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Query Sequence  SLAELVVFGRLAGEQAT
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Template Sequence  LATNARKQGRFAVKNLE
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   298.300.........310....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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