Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	S	I	H	G	H	E	V	L	N	M	M	I	E	S	G	E	Q	Y	T	H	A	S	L	E	A	A	I	K	A	R	F	G	E	Q	A	R	F	H	T	C	S	A	E	G	M	T	A	G	E	L	V	A	F	L	A	A	K	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?												?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Sequence		K	F	I	P	S	K	D	G	F	S	T	D	Q	S	K	I	C	R	H
Secondary structure
SS confidence
Disorder					?			?									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1w2z chain A domain 2 Region: 19 - 60 Aligned: 42 Modelled: 42 Confidence: 35.9% Identity: 10% Fold: Cystatin-like Superfamily: Amine oxidase N-terminal region Family: Amine oxidase N-terminal region Phyre2 PDB 1sgl chain A Region: 16 - 47 Aligned: 31 Modelled: 32 Confidence: 35.7% Identity: 19% Fold: Ribonuclease Rh-like Superfamily: Ribonuclease Rh-like Family: Ribonuclease Rh-like Phyre2 PDB 2xig chain A Region: 8 - 79 Aligned: 64 Modelled: 72 Confidence: 25.8% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites Phyre2 PDB 3ri6 chain A Region: 21 - 67 Aligned: 46 Modelled: 47 Confidence: 24.4% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase; PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes Phyre2 PDB 1vqz chain A domain 1 Region: 7 - 58 Aligned: 44 Modelled: 52 Confidence: 24.2% Identity: 16% Fold: SufE/NifU Superfamily: SufE/NifU Family: SP1160 C-terminal domain-like Phyre2 PDB 2l9f chain A Region: 19 - 59 Aligned: 41 Modelled: 41 Confidence: 22.1% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:cale8; PDBTitle: nmr solution structure of meacp Phyre2 PDB 3c1d chain A Region: 9 - 60 Aligned: 39 Modelled: 41 Confidence: 21.8% Identity: 10% PDB header:recombination, dna binding protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: x-ray crystal structure of recx Phyre2 PDB 2p6r chain A domain 1 Region: 10 - 79 Aligned: 65 Modelled: 70 Confidence: 21.6% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: RecQ helicase DNA-binding domain-like Phyre2 PDB 2o03 chain A Region: 8 - 79 Aligned: 64 Modelled: 64 Confidence: 19.2% Identity: 14% PDB header:gene regulation Chain: A: PDB Molecule:probable zinc uptake regulation protein furb; PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator Phyre2 PDB 2kw0 chain A Region: 7 - 39 Aligned: 30 Modelled: 33 Confidence: 18.4% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli Phyre2 PDB 3d3z chain A Region: 8 - 48 Aligned: 41 Modelled: 41 Confidence: 17.9% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:actibind; PDBTitle: crystal structure of actibind a t2 rnase Phyre2 PDB 3gkx chain B Region: 17 - 66 Aligned: 50 Modelled: 50 Confidence: 17.7% Identity: 30% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative arsc family related protein; PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis Phyre2 PDB 2a2p chain A domain 1 Region: 43 - 60 Aligned: 18 Modelled: 18 Confidence: 17.7% Identity: 28% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Selenoprotein W-related Phyre2 PDB 3c18 chain B Region: 9 - 60 Aligned: 41 Modelled: 52 Confidence: 17.0% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:nucleotidyltransferase-like protein; PDBTitle: crystal structure of nucleotidyltransferase-like protein2 (zp_00538802.1) from exiguobacterium sibiricum 255-15 at 1.90 a3 resolution Phyre2 PDB 1z3e chain A domain 1 Region: 17 - 66 Aligned: 50 Modelled: 50 Confidence: 17.0% Identity: 14% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: ArsC-like Phyre2 PDB 3l78 chain A Region: 17 - 66 Aligned: 50 Modelled: 50 Confidence: 16.9% Identity: 6% PDB header:transcription Chain: A: PDB Molecule:regulatory protein spx; PDBTitle: the crystal structure of smu.1142c from streptococcus mutans ua159 Phyre2 PDB 1bol chain A Region: 8 - 39 Aligned: 32 Modelled: 32 Confidence: 16.5% Identity: 31% Fold: Ribonuclease Rh-like Superfamily: Ribonuclease Rh-like Family: Ribonuclease Rh-like Phyre2 PDB 3r1f chain O Region: 10 - 32 Aligned: 23 Modelled: 23 Confidence: 15.7% Identity: 35% PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis Phyre2 PDB 1ksi chain A Region: 18 - 60 Aligned: 43 Modelled: 43 Confidence: 15.6% Identity: 9% PDB header:oxidoreductase Chain: A: PDB Molecule:copper amine oxidase; PDBTitle: crystal structure of a eukaryotic (pea seedling) copper-containing2 amine oxidase at 2.2a resolution Phyre2 PDB 1dv5 chain A Region: 19 - 60 Aligned: 42 Modelled: 42 Confidence: 15.5% Identity: 14% Fold: Acyl carrier protein-like Superfamily: ACP-like Family: apo-D-alanyl carrier protein Phyre2 1 d1w2za2 2 d1sgla_ 3 c2xigA_ 4 c3ri6A_ 5 d1vqza1 6 c2l9fA_ 7 c3c1dA_ 8 d2p6ra1 9 c2o03A_ 10 c2kw0A_ 11 c3d3zA_ 12 c3gkxB_ 13 d2a2pa1 14 c3c18B_ 15 d1z3ea1 16 c3l78A_ 17 d1bola_ 18 c3r1fO_ 19 c1ksiA_ 20 d1dv5a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1w2za2 35.9 10 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 2 d1sgla_ 35.7 19 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 3 c2xigA_ 25.8 13 PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites 4 c3ri6A_ 24.4 22 PDB header:transferase Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase; PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes 5 d1vqza1 24.2 16 Fold:SufE/NifU Superfamily:SufE/NifU Family:SP1160 C-terminal domain-like 6 c2l9fA_ 22.1 20 PDB header:transferase Chain: A: PDB Molecule:cale8; PDBTitle: nmr solution structure of meacp 7 c3c1dA_ 21.8 10 PDB header:recombination, dna binding protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: x-ray crystal structure of recx 8 d2p6ra1 21.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RecQ helicase DNA-binding domain-like 9 c2o03A_ 19.2 14 PDB header:gene regulation Chain: A: PDB Molecule:probable zinc uptake regulation protein furb; PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator 10 c2kw0A_ 18.4 23 PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli 11 c3d3zA_ 17.9 15 PDB header:hydrolase Chain: A: PDB Molecule:actibind; PDBTitle: crystal structure of actibind a t2 rnase 12 c3gkxB_ 17.7 30 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative arsc family related protein; PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis 13 d2a2pa1 17.7 28 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 14 c3c18B_ 17.0 22 PDB header:transferase Chain: B: PDB Molecule:nucleotidyltransferase-like protein; PDBTitle: crystal structure of nucleotidyltransferase-like protein2 (zp_00538802.1) from exiguobacterium sibiricum 255-15 at 1.90 a3 resolution 15 d1z3ea1 17.0 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 16 c3l78A_ 16.9 6 PDB header:transcription Chain: A: PDB Molecule:regulatory protein spx; PDBTitle: the crystal structure of smu.1142c from streptococcus mutans ua159 17 d1bola_ 16.5 31 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 18 c3r1fO_ 15.7 35 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 19 c1ksiA_ 15.6 9 PDB header:oxidoreductase Chain: A: PDB Molecule:copper amine oxidase; PDBTitle: crystal structure of a eukaryotic (pea seedling) copper-containing2 amine oxidase at 2.2a resolution 20 d1dv5a_ 15.5 14 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:apo-D-alanyl carrier protein 21 c2kokA_ not modelled 15.3 10 PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: solution structure of an arsenate reductase (arsc) related protein2 from brucella melitensis. seattle structural genomics center for3 infectious disease target braba.00007.a. 22 d1qasa1 not modelled 14.8 32 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 23 d1rw1a_ not modelled 14.7 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 24 d1pixa2 not modelled 14.6 18 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 25 c3dfgA_ not modelled 14.6 29 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx: a potent inhibitor protein of2 reca from xanthomonas campestris 26 d1rqta_ not modelled 13.7 21 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 27 c1rqtB_ not modelled 13.7 21 PDB header:ribosome Chain: B: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli 28 c1rqtA_ not modelled 13.7 21 PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli 29 d1iyba_ not modelled 13.2 25 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 30 c3d5lA_ not modelled 13.2 18 PDB header:signaling protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of regulatory protein recx 31 d3elna1 not modelled 12.0 29 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 32 c3ffhA_ not modelled 12.0 16 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262. 33 c2hl7A_ not modelled 11.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 34 c3fz4A_ not modelled 11.2 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative arsenate reductase; PDBTitle: the crystal structure of a possible arsenate reductase from2 streptococcus mutans ua159 35 d1y4ia1 not modelled 11.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 36 c2pqxA_ not modelled 11.0 19 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease i; PDBTitle: e. coli rnase 1 (in vivo folded) 37 d1c7ga_ not modelled 10.8 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases 38 d1dixa_ not modelled 10.7 26 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 39 c3bv8A_ not modelled 10.6 27 PDB header:transferase Chain: A: PDB Molecule:tetrahydrodipicolinate acetyltransferase; PDBTitle: crystal structure of the n-terminal domain of tetrahydrodipicolinate2 acetyltransferase from staphylococcus aureus 40 d1ucda_ not modelled 10.5 21 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 41 c2dbgA_ not modelled 10.4 17 PDB header:immune system Chain: A: PDB Molecule:myeloid cell nuclear differentiation antigen; PDBTitle: solution structure of the pyrin (paad-dapin) domain in2 human myeloid cell nuclear differentiation antigen 42 d1tpla_ not modelled 10.4 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases 43 c3s2xB_ not modelled 10.3 38 PDB header:transferase Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha; PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain 44 d1bw6a_ not modelled 10.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 45 d1y74b1 not modelled 9.8 35 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 46 d1kkca2 not modelled 9.8 35 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 47 d2ctza1 not modelled 9.6 20 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 48 d1iooa_ not modelled 9.3 31 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 49 c2fcdA_ not modelled 9.3 17 PDB header:cell cycle Chain: A: PDB Molecule:myosin light chain 1; PDBTitle: solution structure of n-lobe myosin light chain from2 saccharomices cerevisiae 50 d1wuua2 not modelled 9.1 21 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Galactokinase 51 d1tp6a_ not modelled 9.1 19 Fold:Cystatin-like Superfamily:NTF2-like Family:PA1314-like 52 d1dt0a2 not modelled 9.0 37 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 53 d1qn2a_ not modelled 8.8 16 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 54 d2nyba2 not modelled 8.5 39 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 55 d1jy5a_ not modelled 8.3 13 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 56 c3ee4A_ not modelled 8.3 10 PDB header:oxidoreductase Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase; PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis 57 c1vd3A_ not modelled 7.9 35 PDB header:hydrolase Chain: A: PDB Molecule:rnase ngr3; PDBTitle: ribonuclease nt in complex with 2'-ump 58 c3r24A_ not modelled 7.8 20 PDB header:transferase, viral protein Chain: A: PDB Molecule:2'-o-methyl transferase; PDBTitle: crystal structure of nsp10/nsp16 complex of sars coronavirus" if2 possible 59 c1fm6V_ not modelled 7.8 20 PDB header:transcription Chain: V: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 60 c2hfpB_ not modelled 7.7 23 PDB header:transcription Chain: B: PDB Molecule:src peptide fragment; PDBTitle: crystal structure of ppar gamma with n-sulfonyl-2-indole2 carboxamide ligands 61 c3mwmA_ not modelled 7.7 18 PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur 62 c3kmgE_ not modelled 7.6 20 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator-1; PDBTitle: the x-ray crystal structure of ppar-gamma in complex with an indole2 derivative modulator, gsk538, and an src-1 peptide 63 d1kfia3 not modelled 7.6 15 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 64 c2f9yB_ not modelled 7.6 27 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 65 d2f9yb1 not modelled 7.6 27 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 66 c1fm9E_ not modelled 7.6 23 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and gi262570 and co-activator peptides. 67 c1fm6E_ not modelled 7.6 23 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 68 c1k74E_ not modelled 7.6 23 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.3 angstrom resolution crystal structure of the2 heterodimer of the human ppargamma and rxralpha ligand3 binding domains respectively bound with gw409544 and 9-cis4 retinoic acid and co-activator peptides. 69 c3ingA_ not modelled 7.5 24 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of homoserine dehydrogenase (np_394635.1) from2 thermoplasma acidophilum at 1.95 a resolution 70 d1ma1a2 not modelled 7.3 33 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 71 c1f93H_ not modelled 7.3 37 PDB header:transcription Chain: H: PDB Molecule:hepatocyte nuclear factor 1-alpha; PDBTitle: crystal structure of a complex between the dimerization2 domain of hnf-1 alpha and the coactivator dcoh 72 d1idsa2 not modelled 7.2 37 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 73 c3ff5B_ not modelled 7.1 28 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 74 c3e3vA_ not modelled 7.1 21 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx from lactobacillus salivarius 75 c3s93B_ not modelled 7.1 17 PDB header:transcription Chain: B: PDB Molecule:tudor domain-containing protein 5; PDBTitle: crystal structure of conserved motif in tdrd5 76 c1f93G_ not modelled 7.1 37 PDB header:transcription Chain: G: PDB Molecule:hepatocyte nuclear factor 1-alpha; PDBTitle: crystal structure of a complex between the dimerization2 domain of hnf-1 alpha and the coactivator dcoh 77 d1ix9a2 not modelled 7.0 46 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 78 c1g39C_ not modelled 6.8 37 PDB header:transcription Chain: C: PDB Molecule:hepatocyte nuclear factor 1-alpha; PDBTitle: wild-type hnf-1alpha dimerization domain 79 d1gv3a2 not modelled 6.7 23 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 80 c2e7uA_ not modelled 6.6 15 PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8 81 c1gv3B_ not modelled 6.6 20 PDB header:manganese superoxide dismutase Chain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase 82 d1uera2 not modelled 6.4 33 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 83 c3f2hA_ not modelled 6.4 21 PDB header:lyase Chain: A: PDB Molecule:alkylmercury lyase; PDBTitle: crystal structure of the mercury-bound form of merb mutant2 c160s, the organomercurial lyase involved in a bacterial3 mercury resistance system 84 c2w85A_ not modelled 6.3 28 PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 85 d1tyya_ not modelled 6.3 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 86 d2hrca1 not modelled 6.3 15 Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase 87 d1qgna_ not modelled 6.2 24 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 88 d1vefa1 not modelled 6.2 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 89 c2k6sB_ not modelled 6.2 21 PDB header:protein transport Chain: B: PDB Molecule:rab11fip2 protein; PDBTitle: structure of rab11-fip2 c-terminal coiled-coil domain 90 d1my6a2 not modelled 6.2 31 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 91 d1e5ea_ not modelled 6.2 24 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 92 c2zsmA_ not modelled 6.1 15 PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form 93 d1mnga2 not modelled 5.9 30 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 94 d2coba1 not modelled 5.9 43 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Psq domain 95 c2k5eA_ not modelled 5.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195 96 d1vdla_ not modelled 5.8 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 97 d2p4ka2 not modelled 5.8 37 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 98 d1p7ga2 not modelled 5.7 20 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 99 c2prgC_ not modelled 5.6 23 PDB header:complex (thiazolidinedione/receptor) Chain: C: PDB Molecule:nuclear receptor coactivator src-1; PDBTitle: ligand-binding domain of the human peroxisome proliferator2 activated receptor gamma

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0