Job Description P31826 Confidence 98.07% Date Thu Jan 5 11:48:49 GMT 2012 Rank 85 Aligned Residues 185 % Identity 16% Template c3thxB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh3; PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp Resolution 2.70 Å

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		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.									.	.	380	.
Predicted Secondary structure																																																					.																	.	.	.	.	.	.	.	.
Query SS confidence																																																					.																	.	.	.	.	.	.	.	.
Query Sequence		L	M	K	S	R	Q	A	F	M	L	V	S	N	N	L	S	W	F	I	Y	K	Y	D	E	L	A	E	L	A	A	V	I	D	R	L	Y	E	F	H	Q	L	T	E	Q	R	P	T	N	K	P	K	.	N	C	Q	H	A	V	Q	V	A	D	A	S	I	R	T	P	.	.	.	.	.	.	.	.	D	N	K	I
Query Conservation																																																					.																	.	.	.	.	.	.	.	.
Alig confidence																																																					.													.	.			.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.
Template Sequence		V	L	D	C	S	A	E	W	L	D	F	L	E	K	F	S	E	H	Y	H	S	L	C	K	A	V	H	H	L	A	T	V	D	C	I	F	S	L	A	K	V	A	K	Q	G	D	Y	C	R	P	T	V	Q	E	E	R	K	I	V	I	K	N	G	R	.	.	H	P	V	I	D	V	L	L	G	E	Q	D	Q	Y
Template Known Secondary structure																	G	G	G																									T	S	S	S		B						S	S										.	.								T		S		S	S	S
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		791	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.			.	.	.	.	.	860	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.									.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.
Query Sequence		I	L	E	N	L	N	F	H	V	S	P	G	K	W	L	L	L	K	G	Y	S	G	A	G	K	T	T	L	L	K	T	L	S	.	.	.	.	.	.	.	.	H	C	W	P	W	F	K	G	D	I	S	S	P	A	D	S	W	Y	V	S	Q	T	P	L	I	K	T	G	L	L	K	E	I	I	C	K	A	L	P
Query Conservation																																			.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	N	N	T	D	L	S	E	D	S	E	R	V	M	I	I	T	G	P	N	M	G	G	K	S	S	Y	I	K	Q	V	A	L	I	T	I	M	A	Q	I	G	S	Y	.	.	.	.	.	.	.	.	V	P	A	E	E	A	T	I	G	I	V	D	G	I	F	T	R	M	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	S								S																							T			.	.	.	.	.	.	.	.	B	S	S	S								S							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		869	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.									.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.			.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		L	P	V	D	D	K	S	L	S	E	V	L	H	Q	V	G	L	G	K	L	A	A	R	I	H	D	H	D	R	W	G	D	I	L	S	.	.	S	G	E	K	Q	R	I	A	L	A	R	L	I	L	R	R	P	K	W	I	F	L	D	E	T	T	S	H	L	E	E	Q	E	A	I	R	L	L	R	L	V	R	E
Query Conservation																																					.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	M	E	E	L	T	D	T	A	E	I	I	R	K	A	T	S	Q	S	L	V	I	L	D	E	L	G	R	G	T	S	T	H	D	G	I	A	I	A	Y	A	T	L	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T							S	T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																				941	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.
		532	.			.		.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.		.
Query SS confidence				.	.		.
Query Sequence		K	L	.	.	P	.	T	S	G	V	I	M	V	T	H	Q	P	G	V	W	N
Query Conservation				.	.		.
Alig confidence				.	.		.
Template Conservation
Template Sequence		Y	F	I	R	D	V	K	S	L	T	L	F	V	T	H	Y	P	P	V	C	E
Template Known Secondary structure						T	T									S		G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		987	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions