Return to main results Retrieve Phyre Job Id

Job DescriptionP31826
Confidence95.44%DateThu Jan 5 11:48:49 GMT 2012
Rank301Aligned Residues129
% Identity16%Templatec3llmB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   390.........400........ .410.........420.........430.........440.........450.........460....
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Query Sequence  VSPGKWLLLKGYSGAGKTT. . . . . LLKTLSHCWPWFKGDISSPADSWYVSQTPLIKTGLLKEIICKALPLPVDDKSLSEV
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Template Sequence  ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQ. . . . . . . . . . . . . . . . . . . . . . . . PRRISAVSVAER
Template Known Secondary structure 
S

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GGG
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   401........410.........420.........430.........440.... .....450......
 
   465....470......... 480.........490.........500.........510... ......520.........530.....
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Query Sequence  LHQVGLGKLAARIHD. . . . . . . . HDRWGDILSSGEKQRIALARLILRRPKWIFLDET. TSHLEEQEAIRLLRLVREKLPT
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Template Sequence  VAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE
Template Known Secondary structure  TTT

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   457..460.........470.........480.........490.........500.........510.........520.........530......
 
   536...540..
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Query Sequence  SGVIMVT
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Template Sequence  VRIVLXS
Template Known Secondary structure  S
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   537..540...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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