Job Description P31826 Confidence 96.89% Date Thu Jan 5 11:48:49 GMT 2012 Rank 139 Aligned Residues 120 % Identity 20% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	H	V	S	P	G	K	W	L	L	L	K	G	Y	S	G	A	G	K	T	T	L	L	K	T	L	S	H	C	W	P	W	F	K	G	D	I	S	S	P	A	D	S	W	Y	V	S	Q	T	P	L	I	K	T	G	L	L	K	E	I	I	C	K	A	L	P	L	P	V	D	D	K	S	L	S	E	V	L	H
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	Q	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	S	I	K	G	P	E	L	L	T	M	W	F	G	.	.	.	.	E	S	E	A	N	V	R	E	I	F	D
Template Known Secondary structure		T	S						S								T	T	S													T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	.	.	.	.	T		T							T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.																	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.					.	.	.	.	.	.	560	.	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.														.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530			.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query Sequence		Q	V	G	L	G	K	L	A	A	R	I	H	D	H	D	R	W	G	D	I	L	S	S	G	E	K	Q	R	I	A	L	A	R	L	I	L	R	R	P	K	W	I	F	L	D	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	H	L	E	E	Q	E	A	I	R	L	L	R	L	V	R	.	.	E
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	M	S
Template Known Secondary structure		T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		565	.	.	.																																	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.								550	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.
Query Sequence		K	L	P	T	S	G	V	I	M	V	T	H	Q	P	G	V	W	N	.	.	.	.	.	.	.	L	A	D	D	I	C	D	I	S
Query Conservation																				.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P
Template Known Secondary structure		T	T	S	S								S		G	G	G			G	G	G	T	S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions