Job Description P31826 Confidence 100.00% Date Thu Jan 5 11:48:49 GMT 2012 Rank 5 Aligned Residues 521 % Identity 17% Template c3b5xB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae Resolution 5.50 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		M	L	I	A	K	Y	L	C	L	L	K	P	F	W	L	R	K	N	N	K	T	S	V	L	L	I	I	I	I	L	A	M	I	L	G	V	V	K	I	Q	V	W	L	N	D	W	N	N	D	F	F	N	.	A	L	S	Q	K	E	T	D	K	L	W	Q	L	V	L	W	F	P	A	L	L	G	I	F	V	L	I
Query Conservation																																																						.
Alig confidence																		.	.	.	.	.	.	.	.	.																												.
Template Conservation																		.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	F	K	R	L	W	T	Y	I	R	L	Y	K	A	G	.	.	.	.	.	.	.	.	.	L	V	V	S	T	I	A	L	V	I	N	A	A	A	D	T	Y	M	I	S	L	L	K	P	L	L	D	E	G	F	G	N	A	E	S	N	F	L	R	I	L	P	F	M	I	L	G	L	M	F	V	R	G	L	S
Template Known Secondary structure		T										T	T	S	G	G	G	.	.	.	.	.	.	.	.	.	G	T	T	T	T	T	T	T												T	T	T	T	T	T					S	S	S	T	B	T	T	B	T	T	T	S	T	T	T	T									G	G
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.										.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	N	K	T	W	L	I	K	L	L	T	I	R	W	R	E	W	L	T	D	Y	Y	L	N	R	W	F	A	D	K	N	Y	Y	F	T	Q	I	Y	G	E	H	K	N	T	D	N	P	D	Q	R	I	A	E	D	I	L	L	L	I	S	K	T	L	S	L	S	F	G	F	I	Q	S	L	S	M	L	I	T	F
Query Conservation
Alig confidence																																							.	.	.	.	.
Template Conservation																																							.	.	.	.	.
Template Sequence		G	F	A	S	S	Y	C	L	S	W	V	S	G	N	V	V	M	Q	M	R	R	R	L	F	N	H	F	M	H	M	P	V	R	F	F	D	Q	.	.	.	.	.	E	S	T	G	G	L	L	S	R	I	T	Y	D	S	E	Q	V	A	G	A	T	S	R	A	L	V	S	I	V	R	E	G	A	S	I	I	G	L
Template Known Secondary structure		G	T	T	T	T	T	T	T	S	S	S	S	S																T	S	T	T	T	T	T	T	T	.	.	.	.	.	S									T	T	T													T	T	T	T	S	T	T	S	S	S	T	T	T	T
Template Predicted Secondary structure																																							.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	I	L	W	E	S	A	G	T	L	S	F	T	V	G	G	T	E	W	N	I	Q	G	Y	M	V	Y	T	V	V	L	I	V	I	G	G	T	L	F	T	H	K	V	G	K	R	I	R	P	L	N	V	E	K	Q	R	S	E	A	T	F	R	T	N	L	V	Q	H	N	K	Q	A	E	L	I	A	L	S	N
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	L	M	F	W	N	S	W	Q	L	S	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	V	V	A	P	V	V	A	F	A	I	S	F	V	S	K	R	F	R	K	I	S	R	N	M	Q	T	A	M	G	H	V	T	S	S	A	E	Q	M	L	K	G	H	K	V	V	L	S	Y	G
Template Known Secondary structure		T	T	T	T	T	T	T	S	T	T	S	S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	T	T	T	T	T							T	T	T	T	T	T	T	T	T	T	T	T	T											G	G	G
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170																.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	S	L	Q	R	Q	E	L	S	D	N	F	H	T	I	K	E	N	W	H	R	L	M	N	R	Q	R	W	L	D	Y	W	Q	N	I	Y	S	R	S	L	S	V	L	P	Y	F	L	L	L	P	Q	F	I	S	G	Q	I	N	L	G	G	L	M	K	S	R	Q	A	F	M	L	V	S	N	N	L	S	W	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	E	V	E	R	K	R	F	D	K	V	S	N	S	M	R	Q	Q	T	M	K	L	V	S	A	Q	S	I	A	D	P	V	I	Q	M	I	A	S	L	A	L	F	A	V	L	F	L	A	S	V	D	S	I	R	A	E	L	T	P	G	T	F	T	V	V	F	S	A	M	F	G	L	M	R	P	L	K	A	L
Template Known Secondary structure			T	T																							T	T	T	T									T	T	T	T	T	T	T	T	T	T					T	T	T	T		T	T	S	S	S	S	T	T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																			.	.																		.
Query SS confidence																																			.	.																		.
Query Sequence		I	Y	K	Y	D	E	L	A	E	L	A	A	V	I	D	R	L	Y	E	F	H	Q	L	T	E	Q	R	P	T	N	K	P	K	.	.	N	C	Q	H	A	V	Q	V	A	D	A	S	I	R	T	P	D	.	N	K	I	I	L	E	N	L	N	F	H	V	S	P	G	K	W	L	L	L	K	G	Y	S	G	A	G
Query Conservation																																			.	.																		.
Alig confidence																																			.	.																		.
Template Conservation
Template Sequence		T	S	V	T	S	E	F	Q	R	G	M	A	A	C	Q	T	L	F	G	L	M	D	L	E	T	E	R	D	N	G	K	Y	E	A	E	R	V	N	G	E	V	D	V	K	D	V	T	F	T	Y	Q	G	K	E	K	P	A	L	S	H	V	S	F	S	I	P	Q	G	K	T	V	A	L	V	G	R	S	G	S	G
Template Known Secondary structure																		T	T	T	T	S			S							S	S			S							B			S					S	S	T	T	S			S	S		S							S	S									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430														.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	T	T	L	L	K	T	L	S	H	C	W	P	W	F	K	G	D	I	S	S	P	A	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Y	V	S	Q	T	P	L	I	K	T	G	L	L	K	E	I	I	C	K	A	L	P	L	P	V	D	D	K	S	L	S	E	V	L	H	Q	V	G	L	G	K
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	T	I	A	N	L	F	T	R	F	Y	D	V	D	S	G	S	I	C	L	D	G	H	D	V	R	D	Y	K	L	T	N	L	R	R	H	F	A	L	V	S	Q	N	V	H	L	F	N	D	T	I	A	N	N	I	A	Y	A	A	E	G	E	Y	T	R	E	Q	I	E	Q	A	A	R	Q	A	H	A	M	E
Template Known Secondary structure								T	T	S			S	S					S				T	T			S	T	T	S		S	S	S	S	S	T	T						S	S					T	T								T	T	S	S	S	S			S		S	T	T						T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		473	.	.	.	.	.	.						480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		L	A	A	R	I	H	D	.	.	.	.	.	H	D	R	W	G	D	I	L	S	S	G	E	K	Q	R	I	A	L	A	R	L	I	L	R	R	P	K	W	I	F	L	D	E	T	T	S	H	L	E	E	Q	E	A	I	R	L	L	R	L	V	R	E	K	L	P	T	S	G	V	I	M	V	T	H	Q	P	G	V
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.
Template Conservation
Template Sequence		F	I	E	N	M	P	Q	G	L	D	T	V	I	G	E	N	G	T	S	L	S	G	G	Q	R	Q	R	V	A	I	A	R	A	L	L	R	D	A	P	V	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	N	K	T	V	L	V	I	A	H	R	L	S	T
Template Known Secondary structure		T	T	T	S	S	S	S		S	S					S	S		S	S	S		T	T												T				S	S						S		S	S			T	T	T										T	T	T	T	T	S							S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
		548	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	L	A	D	D	I	C	D	I	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	Q	A	D	E	I	L	V	V	D	E
Template Known Secondary structure		G	G	T		S							S
Template Predicted Secondary structure
Template SS confidence
		542	.	.	.	.	.	.	.	550	.	.	.