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Job DescriptionP31826
Confidence100.00%DateThu Jan 5 11:48:49 GMT 2012
Rank4Aligned Residues519
% Identity15%Templatec3b5wE_
PDB info PDB header:membrane proteinChain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba
Resolution5.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   12.......20.........30.........40.........50.........60.. .......70.........80.........90
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Query Sequence  IAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNA. LSQKETDKLWQLVLWFPALLGIFVLISV
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Template Sequence  FRRLWPTIAPFKAG. . . . . . . . . LIVAGVALILNAASDTFMLSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSY
Template Known Secondary structure  TTTTGGG
.........TSSTTTTTSSSS
TT
STTTTTTTTTTTTT
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   13......20...... ...30.........40.........50.........60.........70.........80...
 
   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  NKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTV
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Template Sequence  VSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK. . . . . QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFI
Template Known Secondary structure  TTTTS
SSGGGS.....

SSTTTT
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   84.....90.........100.........110........ .120.........130.........140.........150........
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  ILWESAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQAELIALSNAE
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Template Sequence  MMFYYSWQLSII. . . . . . . . . . . . . . . LIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQ
Template Known Secondary structure  SS

SSSS...............TTTTS
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   159160.........170 .........180.........190.........200.........210.........220...
 
   251........260.........270.........280.........290.........300.........310.........320.........330
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Query Sequence  SLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVSNNLSWFIY
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Template Sequence  EVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTN
Template Known Secondary structure  TTTTTTSSTGGGS


SSTTTT
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   224.....230.........240.........250.........260.........270.........280.........290.........300...
 
   331........340.........350.........360. ........370........ .380.........390.........400.......
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Query Sequence  KYDELAELAAVIDRLYEFHQLTEQRPTNKPK. . NCQHAVQVADASIRTPD. NKIILENLNFHVSPGKWLLLKGYSGAGKT
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Template Sequence  VNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKS
Template Known Secondary structure  TTTTTSS





S




S


SS
B
B
SSSS
BSS
S


TT


SSTTSS
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   304.....310.........320.........330.........340.........350.........360.........370.........380...
 
   408.410.........420........ .430.........440.........450.........460.........470....
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Query Sequence  TLLKTLSHCWPWFKGDISSPA. . . . . . . . . . . . . DSWYVSQTPLIKTGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLA
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Template Sequence  TIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFI
Template Known Secondary structure  TTT
S

BSS
SSSBTTTS
TT
S




SS
BSTTTTSSSSTTS

TTTTTTST
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   384.....390.........400.........410.........420.........430.........440.........450.........460...
 
   475.... 480.........490.........500.........510.........520.........530.........540.........
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Query Sequence  ARIHD. . . . . HDRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWN
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Template Sequence  NKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE
Template Known Secondary structure  TTSSSSSB



TTS
SS
TTS

S
TTSS

TTTTTSSS

SSGGGTT
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   464.....470.........480.........490.........500.........510.........520.........530.........540...
 
   550.........
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Query Sequence  LADDICDISA
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Template Sequence  KADEIVVVED
Template Known Secondary structure  T
SSB

T
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   544.....550...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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