Job Description P31826 Confidence 97.40% Date Thu Jan 5 11:48:49 GMT 2012 Rank 100 Aligned Residues 198 % Identity 15% Template c2o8dB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair Resolution 3.00 Å

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		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.						.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.															.
Query SS confidence																																																						.	.	.	.	.															.
Query Sequence		K	S	R	Q	A	F	M	L	V	S	N	N	L	S	W	F	I	Y	K	Y	D	E	L	A	E	L	A	A	V	I	D	R	L	Y	E	F	H	Q	L	T	E	Q	R	P	T	N	K	P	K	N	C	Q	.	.	.	.	.	H	A	V	Q	V	A	D	A	S	I	R	T	P	D	.	N	K	I	I	L	E	N	L
Query Conservation																																																						.	.	.	.	.															.
Alig confidence																																																						.	.	.	.	.															.
Template Conservation
Template Sequence		S	L	K	D	C	M	R	R	L	F	Y	N	F	D	K	N	Y	K	D	W	Q	S	A	V	E	C	I	A	V	L	D	V	L	L	C	L	A	N	Y	S	R	G	G	D	G	P	M	C	R	P	V	I	L	L	P	E	D	T	P	P	F	L	E	L	K	G	S	R	H	P	C	G	D	D	F	I	P	N	D	I
Template Known Secondary structure																T	T																								T	T		S	S	S			B							T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		1028	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.
		387	.	.							390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		N	F	H	.	.	.	.	.	.	V	S	P	G	K	W	L	L	L	K	G	Y	S	G	A	G	K	T	T	L	L	K	T	L	S	H	C	W	P	W	F	K	G	D	I	S	S	P	A	D	S	W	Y	V	S	Q	T	P	L	I	K	T	G	L	L	K	E	I	I	C	K	A	L	P	L	P	V	D	D	K	S
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																																																					.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Template Sequence		L	I	G	C	E	E	E	E	Q	E	N	K	A	Y	C	V	L	V	T	G	P	N	M	G	G	K	S	T	L	M	R	Q	A	G	L	L	A	V	M	A	Q	M	G	C	Y	V	P	A	E	V	C	R	L	T	P	I	D	R	V	F	T	.	.	.	.	.	.	.	R	L	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	T	T										B			T	T	S	S																T	T	T			B	S	S	S								S	B				.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Template SS confidence
		1114	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.								.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.			.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.			.		.
Predicted Secondary structure																																												.	.																																.	.		.
Query SS confidence																																												.	.																																.	.		.
Query Sequence		L	S	E	V	L	H	Q	V	G	L	G	K	L	A	A	R	I	H	D	H	D	R	W	G	D	I	L	S	S	G	E	K	Q	R	I	A	L	A	R	L	I	L	.	.	R	R	P	K	W	I	F	L	D	E	T	T	S	H	L	E	E	Q	E	A	I	R	L	L	R	L	V	R	E	K	L	.	.	P	.	T
Query Conservation																																												.	.																																.	.		.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																																.	.		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	F	V	E	L	S	E	T	A	S	I	L	M	H	A	T	A	H	S	L	V	L	V	D	E	L	G	R	G	T	A	T	F	D	G	T	A	I	A	N	A	V	V	K	E	L	A	E	T	I	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T								S		T	T	S																			T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													1188	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	V	I	M	V	T	H	Q	P	G	V	W	N	L	A	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	R	T	L	F	S	T	H	Y	H	S	L	V	E	D	Y	S	Q
Template Known Secondary structure																	T	S	S
Template Predicted Secondary structure
Template SS confidence
		1241	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions