Job Description P31826 Confidence 97.63% Date Thu Jan 5 11:48:49 GMT 2012 Rank 94 Aligned Residues 186 % Identity 18% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.	.	.							.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.														.	.	.	.	.	.
Query SS confidence																																																		.	.	.														.	.	.	.	.	.
Query Sequence		A	F	M	L	V	S	N	N	L	S	W	F	I	Y	K	Y	D	E	L	A	E	L	A	A	V	I	D	R	L	Y	E	F	H	Q	L	T	E	Q	R	P	T	N	K	P	K	N	C	Q	.	.	.	H	A	V	Q	V	A	D	A	S	I	R	T	P	.	.	.	.	.	.	D	N	K	I	I	L	E	N	L	N
Query Conservation																																																		.	.	.														.	.	.	.	.	.
Alig confidence																																																		.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	K	E	I	V	N	I	S	S	G	Y	V	E	P	M	Q	T	L	N	D	V	L	A	Q	L	D	A	V	V	S	F	A	H	V	S	N	G	A	P	V	P	Y	V	R	P	A	I	L	E	K	G	Q	G	R	I	I	L	K	A	S	R	H	A	C	V	E	V	Q	D	E	I	A	F	I	P	N	D	V	Y
Template Known Secondary structure											G	G	G																											S	S	S			B							T	T		S										T	T	T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	V	S	P	G	K	W	L	L	L	K	G	Y	S	G	A	G	K	T	T	L	L	K	T	L	S	H	C	W	P	W	F	K	G	D	I	S	S	P	A	D	S	W	Y	V	S	Q	T	P	L	I	K	T	G	L	L	K	E	I	I	C	K	A	L	P	L	P	V	D	D	K	S	L	S	E	V	L	H	Q
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	G	V	I	V	L	M	A	Q	I	G	C	F	V	P	C	E	S	A	E	V	S	I	V	D	C	I	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	S	S								S	T	T	S	S																	T	T			B	S	S	S								S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.				.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure																																																																				.	.	.
Query SS confidence																																																																				.	.	.
Query Sequence		V	G	L	G	K	L	A	A	R	I	H	D	H	D	R	W	G	D	I	L	S	S	G	E	K	Q	R	I	A	L	A	R	L	I	L	R	R	P	K	W	I	F	L	D	E	T	T	S	H	L	E	E	Q	E	A	I	R	L	L	R	L	V	R	E	K	L	.	.	.	P	T	S	G	V	I	M	V	T	H
Query Conservation																																																																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.																																												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	G	S	T	F	M	A	.	E	M	L	E	T	A	S	I	L	R	S	A	T	K	D	S	L	I	I	I	D	E	L	G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	T	K	I	G	A	F	C	M	F	A	T	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.										T	T			T	T	S						S				S	S																			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
																711	.	.	.	.	.	.	.		.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions