Job Description P31826 Confidence 100.00% Date Thu Jan 5 11:48:49 GMT 2012 Rank 2 Aligned Residues 519 % Identity 17% Template c2hydB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Resolution 3.00 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70									.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.
Query Sequence		L	I	A	K	Y	L	C	L	L	K	P	F	W	L	R	K	N	N	K	T	S	V	L	L	I	I	I	I	L	A	M	I	L	G	V	V	K	I	Q	V	W	L	N	D	W	N	N	D	F	F	N	A	L	S	Q	K	E	T	D	K	.	.	.	.	.	.	.	.	L	W	Q	L	V	L	W	F	P	A	L	L
Query Conservation																																																														.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.
Template Sequence		M	I	K	R	Y	L	Q	F	V	K	P	Y	K	Y	R	.	.	.	.	.	.	.	.	.	I	F	A	T	I	I	V	G	I	I	K	F	G	I	P	M	L	I	P	L	L	I	K	Y	A	I	D	G	V	I	N	N	H	A	L	T	T	D	E	K	V	H	H	L	T	I	A	I	G	I	A	L	F	I	F	V
Template Known Secondary structure											G	G	G				.	.	.	.	.	.	.	.	.										T	T	T																	T	T	T	T		S	S		T	T	T					T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.										.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	F	V	L	I	S	V	N	K	T	W	L	I	K	L	L	T	I	R	W	R	E	W	L	T	D	Y	Y	L	N	R	W	F	A	D	K	N	Y	Y	F	T	Q	I	Y	G	E	H	K	N	T	D	N	P	D	Q	R	I	A	E	D	I	L	L	L	I	S	K	T	L	S	L	S	F	G	F	I	Q	S	L
Query Conservation
Alig confidence																																													.	.	.	.	.
Template Conservation																																													.	.	.	.	.
Template Sequence		I	V	R	P	P	I	E	F	I	R	Q	Y	L	A	Q	W	T	S	N	K	I	L	Y	D	I	R	K	K	L	Y	N	H	L	Q	A	L	S	A	R	F	Y	A	N	.	.	.	.	.	N	Q	V	G	Q	V	I	S	R	V	I	N	D	V	E	Q	T	K	D	F	I	L	T	G	L	M	N	I	W	L	D	C
Template Known Secondary structure			T																																		S							T	.	.	.	.	.	S																T
Template Predicted Secondary structure																																													.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	L	I	T	F	T	V	I	L	W	E	S	A	G	T	L	S	F	T	V	G	G	T	E	W	N	I	Q	G	Y	M	V	Y	T	V	V	L	I	V	I	G	G	T	L	F	T	H	K	V	G	K	R	I	R	P	L	N	V	E	K	Q	R	S	E	A	T	F	R	T	N	L	V	Q	H	N	K	Q	A	E
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	I	I	I	A	L	S	I	M	F	F	L	D	V	K	L	T	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	F	I	F	P	F	Y	I	L	T	V	Y	V	F	F	G	R	L	R	K	L	T	R	E	R	S	Q	A	L	A	E	V	Q	G	F	L	H	E	R	V	Q	G	I	S
Template Known Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	L	S	N	A	E	S	L	Q	R	Q	E	L	S	D	N	F	H	T	I	K	E	N	W	H	R	L	M	N	R	Q	R	W	L	D	Y	W	Q	N	I	Y	S	R	S	L	S	V	L	P	Y	F	L	L	L	P	Q	F	I	S	G	Q	I	N	L	G	G	L	M	K	S	R	Q	A	F	M	L	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	K	S	F	A	I	E	D	N	E	A	K	N	F	D	K	K	N	T	N	F	L	T	R	A	L	K	H	T	R	W	N	A	Y	S	F	A	A	I	N	T	V	T	D	I	G	P	I	I	V	I	G	V	G	A	Y	L	A	I	S	G	S	I	T	V	G	T	L	A	A	F	V	G	Y	L	E	L	L	F
Template Known Secondary structure						T	T																																																						T	T	T	S	S		T	T													T
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.																						.
Query SS confidence																																					.	.	.	.																						.
Query Sequence		N	N	L	S	W	F	I	Y	K	Y	D	E	L	A	E	L	A	A	V	I	D	R	L	Y	E	F	H	Q	L	T	E	Q	R	P	T	.	.	.	.	N	K	P	K	N	C	Q	H	A	V	Q	V	A	D	A	S	I	R	T	P	D	.	N	K	I	I	L	E	N	L	N	F	H	V	S	P	G	K	W	L	L
Query Conservation																																					.	.	.	.																						.
Alig confidence																																					.	.	.	.																						.
Template Conservation
Template Sequence		G	P	L	R	R	L	V	A	S	F	T	T	L	T	Q	S	F	A	S	M	D	R	V	F	Q	L	I	D	E	D	Y	D	I	K	N	G	V	G	A	Q	P	I	E	I	K	Q	G	R	I	D	I	D	H	V	S	F	Q	Y	N	D	N	E	A	P	I	L	K	D	I	N	L	S	I	E	K	G	E	T	V	A
Template Known Secondary structure		T																											T				S	S				T	T								S												S		S	S	S			S										T	T
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430														.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	G	Y	S	G	A	G	K	T	T	L	L	K	T	L	S	H	C	W	P	W	F	K	G	D	I	S	S	P	A	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Y	V	S	Q	T	P	L	I	K	T	G	L	L	K	E	I	I	C	K	A	L	P	L	P	V	D	D	K	S	L	S	E	V
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																																																																							.
Template Sequence		F	V	G	M	S	G	G	G	K	S	T	L	I	N	L	I	P	R	F	Y	D	V	T	S	G	Q	I	L	I	D	G	H	N	I	K	D	F	L	T	G	S	L	R	N	Q	I	G	L	V	Q	Q	D	N	I	L	F	S	D	T	V	K	E	N	I	L	L	G	R	P	.	T	A	T	D	E	E	V	V	E	A
Template Known Secondary structure					S	T	T	S	S						T	T	T	T	T	S	S			S							T	T			G	G	G	S								T						S	S					S	S	B						G	G	G		S	.	S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440		.	.	.	.	.	.	.	.	.	450
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.						480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		L	H	Q	V	G	L	G	K	L	A	A	R	I	H	D	.	.	.	.	.	H	D	R	W	G	D	I	L	S	S	G	E	K	Q	R	I	A	L	A	R	L	I	L	R	R	P	K	W	I	F	L	D	E	T	T	S	H	L	E	E	Q	E	A	I	R	L	L	R	L	V	R	E	K	L	P	T	S	G	V	I
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.
Template Conservation
Template Sequence		A	K	M	A	N	A	H	D	F	I	M	N	L	P	Q	G	Y	D	T	E	V	G	E	R	G	V	K	L	S	G	G	Q	K	Q	R	L	S	I	A	R	I	F	L	N	N	P	P	I	L	I	L	D	E	A	T	S	A	L	D	L	E	S	E	S	I	I	Q	E	A	L	D	V	L	S	K	D	R	T	T	L
Template Known Secondary structure					T	T							T	S	T	T	G	G	G		B			G	G	G	T	T	S																			S						S	T	T	T	T																	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	T	H	Q	P	G	V	W	N	L	A	D	D	I	C	D	I	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	A	H	R	L	S	T	I	T	H	A	D	K	I	V	V	I	E	N
Template Known Secondary structure					S	S	G	G	G	T	T	T		S							T
Template Predicted Secondary structure
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550