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Job DescriptionP31826
Confidence100.00%DateThu Jan 5 11:48:49 GMT 2012
Rank2Aligned Residues519
% Identity17%Templatec2hydB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.........70 .........80..
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Query Sequence  LIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKETDK. . . . . . . . LWQLVLWFPALL
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Template Sequence  MIKRYLQFVKPYKYR. . . . . . . . . IFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV
Template Known Secondary structure 
GGG.........TTTTTTT
SS
TTTTTT
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   1........10..... ....20.........30.........40.........50.........60.........70.
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  GIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSL
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Template Sequence  IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN. . . . . NQVGQVISRVINDVEQTKDFILTGLMNIWLDC
Template Known Secondary structure  TS
T.....S
T




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   72.......80.........90.........100.........110.... .....120.........130.........140......
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  SMLITFTVILWESAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQAE
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Template Sequence  ITIIIALSIMFFLDVKLTLA. . . . . . . . . . . . . . . ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGIS
Template Known Secondary structure 
...............T
Template Predicted Secondary structure  ...............


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   147..150.........160...... ...170.........180.........190.........200.........210.
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  LIALSNAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVS
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Template Sequence  VVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLF
Template Known Secondary structure  TT
TTTSS
TTT
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   212.......220.........230.........240.........250.........260.........270.........280.........290.
 
   323......330.........340.........350....... ..360.........370........ .380.........390.......
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Query Sequence  NNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPT. . . . NKPKNCQHAVQVADASIRTPD. NKIILENLNFHVSPGKWLL
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Template Sequence  GPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVA
Template Known Secondary structure  TT


SS


TT






S


S
SSS

S
TT
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   292.......300.........310.........320.........330.........340.........350.........360.........370.
 
   398.400.........410.........420.........430 .........440.........450.........460....
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Query Sequence  LKGYSGAGKTTLLKTLSHCWPWFKGDISSPADS. . . . . . . . . . . . . WYVSQTPLIKTGLLKEIICKALPLPVDDKSLSEV
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Template Sequence  FVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP. TATDEEVVEA
Template Known Secondary structure 
STTSSTTTTTSS

STTGGGS
T
SS



SSBGGG
S.S

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   372.......380.........390.........400.........410.........420.........430.........440 .........450
 
   465....470......... 480.........490.........500.........510.........520.........530.........
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Query Sequence  LHQVGLGKLAARIHD. . . . . HDRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVI
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Template Sequence  AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTL
Template Known Secondary structure  TT
TSTTGGG
B

GGGTTS


SSTTTT

TTTS
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   451........460.........470.........480.........490.........500.........510.........520.........530
 
   540.........550.........
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Query Sequence  MVTHQPGVWNLADDICDISA
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Template Sequence  IVAHRLSTITHADKIVVIEN
Template Known Secondary structure 
SSGGGTTT
ST
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   531........540.........550
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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