Job Description P76052 Confidence 100.00% Date Thu Jan 5 12:17:52 GMT 2012 Rank 29 Aligned Residues 300 % Identity 16% Template c3khzA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative dipeptidase sacol1801; PDBTitle: crystal structure of r350a mutant of staphylococcus aureus2 metallopeptidase (sapep/dape) in the apo-form Resolution 2.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.													.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	A	I	E	A	D	R	Q	R	Y	T	D	I	A	D	Q	I	W	D	H	P	E	T	R	F	E	E	.	.	.	.	.	.	.	.	.	.	.	.	F	W	S	A	E	H	L	A	S	A	L	E	S	A	G	F	T	V	T	R	N	V	G	N	I	P	N	A	F	I	A	S	F	G	Q	G	K	P	V	I
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation																																																																.	.	.
Template Sequence		K	E	K	V	Q	Q	Y	E	D	Q	I	I	N	D	L	K	G	L	L	A	I	E	S	V	R	D	D	A	K	A	S	E	D	A	P	V	G	P	G	P	R	K	A	L	D	Y	M	Y	E	I	A	H	R	D	G	F	T	T	H	D	V	D	.	.	.	H	I	A	G	R	I	E	A	G	K	G	N	D	V	L
Template Known Secondary structure							T	T													T	S			B			T	T	S			S	S	S	T	T																		T	T							T	.	.	.	T	T									S	S
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.
Predicted Secondary structure																																																										.																			.
Query SS confidence																																																										.																			.
Query Sequence		A	L	L	G	E	Y	D	A	L	A	G	L	S	Q	Q	A	G	C	A	Q	P	T	S	V	T	P	G	E	N	G	H	G	C	G	H	N	L	L	G	T	A	A	F	A	A	A	I	A	V	K	K	W	L	E	Q	Y	.	G	Q	G	G	T	V	R	F	Y	G	C	P	G	E	E	G	G	S	.	G	K	T	F
Query Conservation																																																										.																			.
Alig confidence														.																																												.																			.
Template Conservation														.
Template Sequence		G	I	L	C	H	V	D	V	V	P	A	G	.	D	G	W	D	S	N	P	F	E	P	V	V	T	E	D	A	I	I	A	R	G	T	L	D	D	K	G	P	T	I	A	A	Y	Y	A	I	K	I	L	E	D	M	N	V	D	W	K	K	R	I	H	M	I	I	G	T	D	E	E	S	D	W	K	C	T	D	R
Template Known Secondary structure									B					.	T	T		S	S		T	T	S					S	S				S	T	T	S	T	T	T																	T	T				S	S										T	T					T	T	S
Template Predicted Secondary structure														.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	V	R	E	G	V	F	D	D	V	D	A	A	L	T	W	H	P	E	A	F	A	G	M	F	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	F	K	T	E	E	M	P	T	L	G	F	A	P	D	A	E	F	P	C	I	H	G	E	K	G	I	T	T	F	D	L	V	Q	N	K	L	T	E	D	Q	D	E	P	D	Y	E	L	I	T	F	K	S	G	E	R	Y	N	M	V	P	D	H	A	E	A	R	V	L	V	K	E	N	M	T	D	V	I	Q	D
Template Known Secondary structure						S				S					T	T		S	S		S				B																					S											S	S	S	B												S	S		S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
															182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.																						.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	L	A	N	I	Q	A	S	W	R	F	K	G	I	A	A	H	A	A	N	S	P	H	L	G	R	S	A	L	D	A	V	T	L	M	T	T	G	T	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	E	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.
Template Sequence		F	E	Y	F	L	E	Q	N	H	L	Q	G	D	S	T	V	D	S	G	I	L	V	L	T	V	E	G	K	A	V	H	G	M	D	.	P	S	I	G	V	N	A	G	L	Y	L	L	K	F	L	A	S	L	N	L	D	N	N	A	Q	A	F	V	A	F	S	N	R	Y	L	F	N	S	D	F	G	E	K	M	G
Template Known Secondary structure									T	T									T	T									B			B	T	T	S	.		T	T	S	B											T	T	S		B															T	T	T		T	T	S	G	G	G	T
Template Predicted Secondary structure																																				.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	E	K	A	R	V	H	Y	A	I	T	N	S	G	G	I	S	P	N	V	V	Q	A	Q	A	E	V	L	Y	L	I	R	A	P	E	M	T	D	V	Q	H	I	Y	D	R	V	A	K	I	A	E	G	A	A	L	M	T	E	T	T	V	E	C	R	F	D	K	A	C	S	S	Y	L	P	N	R	T	L	E
Query Conservation
Alig confidence																																																								.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence		M	K	F	H	T	D	V	M	G	D	V	T	T	N	I	G	V	I	T	Y	D	N	E	N	A	G	L	F	G	I	N	L	A	Y	P	E	G	F	E	F	E	K	A	M	D	R	F	A	N	E	I	Q	Q	Y	.	.	.	.	G	F	E	V	K	L	G	K	V	Q	P	P	H	Y	V	D	K	N	D	P	F	V
Template Known Secondary structure							T	T	T														T	T	T												T	T														T	G	G	G	.	.	.	.	T												B			G	G	G
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.					.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		308	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	M	Y	Q	A	L	S	H	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	L	V	T	A	Y	R	N	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions