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Job DescriptionP76052
Confidence100.00%DateThu Jan 5 12:17:52 GMT 2012
Rank13Aligned Residues379
% Identity13%Templatec3dljB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:beta-ala-his dipeptidase; PDBTitle: crystal structure of human carnosine dipeptidase 1
Resolution2.26 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30...... ...40.........50.........60 .......
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Query Sequence  IYRFIDDAIEADRQRYTDIADQIWDHPETRFEE. . . . . . . . FWSAEHLASALESAGFTVTRNVGN. . . . . . . . IPNAFIA
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Template Sequence  LLEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLQSLPIPPVILA
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TTS

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   8.10.........20.........30.........40.........50.........60.........70.........80.......
 
   68.70.. .......80......... 90.........100.........110.........120.........130.. .......140...
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Query Sequence  SFGQG. . KPVIALLGEYDALAGLS. QQAGCAQPTSVTPGENGHGCGHNLLGTAAFAAAIAVKKWLEQY. GQGGTVRFYGC
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Template Sequence  ELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFIIE
Template Known Secondary structure 


TTS


B



GGGT
SS
TTS
TTSTTTTTTTT


SS
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   91........100.........110.........120.........130.........140.........150.........160.........170
 
   144... ..150.........160.........170. ........180.........190........ .200.........210......
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Query Sequence  PGEE. GGSGKTFMVREGVFDDVDAALTWH. . . . PEAFAGMFNTRTLANIQASWRFKGIAA. . HAANSPHLGRSALDAVTL
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Template Sequence  GMEEAGSVALEELVEKEKDRFFSGVDYIVISDNLWISKPAITYGTRGNSYFMVEVKCRDQDFHSGTFGGILHEPMADLVA
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GGGT
TTTTTTTTTT




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S
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   171........180.........190.........200.........210.........220.........230.........240.........250
 
   217..220.. .......230.........240 ..
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Query Sequence  MTTGTN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FLNEHIIEKARVHYAITN. SG
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Template Sequence  LLGSLVDSSGHILVPGIYDEVVPLTEEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAFDE
Template Known Secondary structure  TTSB
TTS
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T
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S
SSTS
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   253......260.........270.........280.........290.........300.........310.........320.........330..
 
   243......250.........260.........270.........280..... ....290.........300.. .......310........
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Query Sequence  GISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMT. . ETTVECRFDKACSSYLP. . NRTLENAMYQALSHFG
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Template Sequence  PGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLGLHPWIANIDDTQYLAAKRAIRTVF
Template Known Secondary structure  SS



S
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   333......340.........350.........360.........370.........380.........390.........400.........410..
 
   319320.........330.........340.........350.........360.........370.........380.........390........
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Query Sequence  TPEWNSEELAFAKQIQATLTSNDRQNSLNNIAATGGENGKVFALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPV
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Template Sequence  TEP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DMIRDGSTIPIAKMFQEIVHK
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   414.. ...420.........430.......
 
   399400.........410.........420.........430.........440....
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Query Sequence  AQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTVNL
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Template Sequence  SVVLIPLGAVDDGEHSQNE. . . . . . KINRWNYIEGTKLFAAFFLEM
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   438.440.........450...... ...460.........470.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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