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Job DescriptionP76052
Confidence100.00%DateThu Jan 5 12:17:52 GMT 2012
Rank14Aligned Residues382
% Identity15%Templatec2zogA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:cytosolic non-specific dipeptidase; PDBTitle: crystal structure of mouse carnosinase cn2 complexed with zn and2 bestatin
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MQEIYRFIDDAIEADRQRYTDIADQIWDHPETR. . . . . . FEEFWSAEHLASALESAGFTVTRNVGN. . . . . . . . . . . IPN
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Template Sequence  MSA. LKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPP
Template Known Secondary structure  .TS

BTT
GGGTT




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Query Sequence  AFIASFGQG. . KPVIALLGEYDALAG. LSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFAAAIAVKKWLEQY. GQGGTVR
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Template Sequence  ILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLR
Template Known Secondary structure 


TTS


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GGGT
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   140....... ..150.........160.. .......170. ........180.........190..... ....200.........210
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Query Sequence  FYGCPGEE. GGSGKTFMVREGVFD. . . DVDAALTWH. . . PEAFAGMFNTRTLANIQASWRFKG. . IAAHAANSPHLGRSA
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Template Sequence  FCLEGMEESGSEGLDELIFAQKDKFFKDVDYVCISDNYWLGKNKPCITYGLRGICYFFIEVECSDKDLHSGVYGGSVHEA
Template Known Secondary structure  S
GGGT
TTTTTTTTTT




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   160.........170.........180.........190.........200.........210.........220.........230.........
 
   211........220.........230... ......240
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Query Sequence  LDAVTLMTTGTNFLNEHIIEKAR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VHYAITN
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Template Sequence  MTDLISLMGCLVDKKGKILIPGINDAVAPVTDEEHALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGI
Template Known Secondary structure  TTSB
TTS
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   240.........250.........260.........270.........280.........290.........300.........310.........
 
   241.. ......250.........260.........270.........280.... .....290.........300.. .......310..
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Query Sequence  SGG. . . . ISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALM. . TETTVECRFDKACSSYLP. . NRTLENAMYQ
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Template Sequence  EGAFSGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGHGGKPWVSDFNHPHYQAGRR
Template Known Secondary structure  SS

SSS



S
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   320.........330.........340.........350.........360.........370.........380.........390.........
 
   313......320.........330.........340.........350.........360.........370.........380.........390..
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Query Sequence  ALSHFGTPEWNSEELAFAKQIQATLTSNDRQNSLNNIAATGGENGKVFALRHRETVLANEVAPYAATDNVLAASTDVGDV
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Template Conservation 
     
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Template Sequence  ALKTVFGVE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PDLTREGGSIPVTLTF
Template Known Secondary structure  SS
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SS

T
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   400........ .410.........420....
 
   393......400.........410.........420.........430.........440....
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Query Sequence  SWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTVNL
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Template Sequence  QEATGKNVMLLPVGSADDGAHSQNE. . . . . . KLNRLNYIEGTKMLAAYLYEV
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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