Job Description P76052 Confidence 99.93% Date Thu Jan 5 12:17:52 GMT 2012 Rank 33 Aligned Residues 322 % Identity 13% Template c2cf4A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:protein ph0519; PDBTitle: pyrococcus horikoshii tet1 peptidase can assemble into a2 tetrahedron or a large octahedral shell Resolution 3.08 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	D	I	A	D	Q	I	W	D	H	P	E	T	R	F	E	E	F	W	S	A	E	H	L	A	S	A	L	E	S	A	G	F	T	V	T	R	N	V	G	N	I	P	N	A	F	I	A	S	F	G	Q	G	K	P	V	I	A	L	L	G	E	Y	D	A	L	A	G	L	S	Q	Q	A	G	C	A	Q	P	T
Query Conservation
Alig confidence																																											.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.																								.	.	.	.	.	.	.	.
Template Sequence		X	I	E	K	L	K	K	F	T	Q	I	P	G	I	S	G	Y	E	E	R	I	R	E	E	I	I	R	E	I	K	D	F	A	D	Y	K	V	D	A	I	G	.	.	.	.	N	L	I	V	E	L	G	E	G	E	E	R	I	L	F	X	A	H	X	D	E	I	G	.	.	.	.	.	.	.	.	L	L	I	T
Template Known Secondary structure												S				T	T												T	T	T	T	S	S						S	S	S	.	.	.	.							S		S	S														.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.																								.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.									.	.	.	70
		99	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		S	V	T	P	G	E	N	G	H	.	.	G	C	G	H	N	L	L	G	T	A	A	F	A	A	A	I	A	V	K	K	W	L	E	Q	Y	G	Q	G	G	T	V	R	F	Y	G	C	P	G	E	E	G	G	S	G	K	T	F	M	V	R	E	G	V	F	D	D	V	D	A	A	L	T	W	H	P	E	A	F	A
Query Conservation											.	.
Alig confidence											.	.																			.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		G	I	T	D	E	G	K	L	R	F	R	K	V	G	G	I	D	D	R	L	L	Y	G	R	H	V	N	V	V	.	.	.	.	.	T	E	K	G	I	L	D	G	V	I	G	A	T	P	P	H	L	S	L	E	R	D	K	S	V	I	P	W	Y	D	L	V	I	D	I	G	A	E	S	K	E	E	A	L	E	L
Template Known Secondary structure					T	T	S								S				G	G	G	T	T	T							.	.	.	.	.		S	S													S	S		S	S				S				T	T	S			B	B				S	S						T	T
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		G	M	F	N	T	R	T	L	A	N	I	Q	A	S	W	R	F	K	G	I	A	A	H	A	A	N	S	P	H	L	G	R	S	A	L	D	A	V	T	L	M	T	T	G	T	N	F	L	N	E	H	I	I	E	K	A	R	V	H	Y	A	I	T	N	S	G	G	I	.	.	.	.	.	S	P	N	V	V	Q	A
Query Conservation																																																																						.	.	.	.	.
Alig confidence								.	.																			.																							.	.																		.	.	.	.	.
Template Conservation								.	.																			.																							.	.
Template Sequence		V	K	P	L	D	F	.	.	A	V	F	K	K	H	F	S	V	L	N	G	K	Y	V	S	T	R	.	G	L	D	D	R	F	G	V	V	A	L	I	E	A	I	K	D	L	V	D	H	E	.	.	L	E	G	K	V	I	F	A	F	T	V	Q	E	E	V	G	L	K	G	A	K	F	L	A	N	H	Y	Y	P
Template Known Secondary structure				T	T			.	.											S	S	S					T	.	T																S	S	G	G	G		.	.		S	S								S	S		T	T	T	S							T	T	T
Template Predicted Secondary structure								.	.																			.																							.	.
Template SS confidence
		146	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	E	V	L	Y	L	I	R	A	P	E	M	T	D	V	Q	H	I	Y	D	R	V	A	K	I	A	E	G	A	A	L	M	T	E	T	T	V	E	C	R	F	D	K	A	C	S	S	Y	L	P	N	R	T	L	E	N	A	M	Y	Q	A	L	S	H	F	G	T	P	E	W	N	S	E	E	L	A	F	A	K
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Y	A	F	A	I	D	S	F	A	C	C	S	P	L	T	G	D	V	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	G	P	V	I	R	A	V	D	N	S	A	I	Y	.	.	S	R	D	L	A	R	K	V	W	S	I	A	E	K	N	G	I	E	I	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S										S	S	S	S	S	T	T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S									S	S		B		.	.														T	T	T				.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.														.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	Q	A	T	L	T	S	N	D	R	Q	N	S	L	N	N	I	A	A	T	G	G	E	N	G	K	V	F	A	L	R	H	R	E	T	V	L	A	N	E	V	A	P	Y	A	A	T	D	N	V	L	A	A	S	T	D	V	G	D	V	S	W	K	L	P	V	A	Q	C	F	S	P	C	F	A	V	G	T	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	G	V	T	G	G	G	T	D	A	S	A	F	Q	D	R	S	K	T	L	A	L	S	V	P	I	K	Y	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S			G	G	G	G	T	T	T	S	S											S	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template SS confidence
																																																	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	T	W	Q	L	V	S	Q	G	R	T	S	I	A	H	K	G	M	L	L	A	A	K	T	M	A	A	T	T	V	N	L
Query Conservation
Alig confidence								.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.
Template Sequence		L	H	S	E	V	E	.	.	.	.	.	.	T	L	H	L	N	D	L	E	K	L	V	K	L	I	E	A	L	A	F	E	L
Template Known Secondary structure		T	T	T	T	T		.	.	.	.	.	.												T	T	S	S	T	T	T	T	T
Template Predicted Secondary structure								.	.	.	.	.	.
Template SS confidence
		305	.	.	.	.	310							.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions