Job Description P76052 Confidence 100.00% Date Thu Jan 5 12:17:52 GMT 2012 Rank 3 Aligned Residues 352 % Identity 21% Template c1ysjB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein yxep; PDBTitle: crystal structure of bacillus subtilis yxep protein (apc1829), a2 dinuclear metal binding peptidase from m20 family Resolution 2.40 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		E	A	D	R	Q	R	Y	T	D	I	A	D	Q	I	W	D	H	P	E	T	R	F	E	E	F	W	S	A	E	H	L	A	S	A	L	E	S	A	G	F	T	V	T	R	N	V	G	N	I	P	N	A	F	I	A	S	F	G	Q	G	K	.	.	P	V	I	A	L	L	G	E	Y	D	A	L	A	G	L	S	Q
Query Conservation																																																															.	.
Alig confidence																																														.																	.	.
Template Conservation																																														.
Template Sequence		K	A	F	H	T	R	L	I	N	X	R	R	D	L	H	E	H	P	E	L	S	F	Q	E	V	E	T	T	K	K	I	R	R	W	L	E	E	E	Q	I	E	I	L	D	.	V	P	Q	L	K	T	G	V	I	A	E	I	K	G	R	E	D	G	P	V	I	A	I	R	A	D	I	D	A	L	P	I	Q	E	Q
Template Known Secondary structure																		S				T	T															T	T	T						.		T	T		S	S									S															B	S
Template Predicted Secondary structure																																														.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	G	C	A	Q	P	T	S	V	T	P	G	E	N	G	H	G	C	G	H	N	L	L	G	T	A	A	F	A	A	A	I	A	V	K	K	W	L	E	Q	Y	G	Q	G	G	T	V	R	F	Y	G	C	P	G	E	E	G	G	S	G	K	T	F	M	V	R	E	G	V	F	D	D	V	D	A	A	L	T	W
Query Conservation
Alig confidence							.	.	.																															.	.
Template Conservation							.	.	.																															.	.
Template Sequence		T	N	L	P	F	.	.	.	A	S	K	V	D	G	T	X	H	A	C	G	H	D	F	H	T	A	S	I	I	G	T	A	X	L	L	N	Q	R	.	.	R	A	E	L	K	G	T	V	R	F	I	F	Q	P	A	E	E	I	A	A	G	A	R	K	V	L	E	A	G	V	L	N	G	V	S	A	I	F	G	X
Template Known Secondary structure		S			T	T	.	.	.			S	S	T	T		B		T	T																	T	T		.	.	T	T	T											S		T	T	T	T									T	T	T	T	T	T
Template Predicted Secondary structure							.	.	.																															.	.
Template SS confidence
		83	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	E	A	F	A	G	M	F	N	T	R	T	L	A	N	I	Q	A	S	W	R	F	K	G	I	A	A	H	A	A	N	S	P	H	L	G	R	S	A	L	D	A	V	T	L	M	T	T	G	T	N	F	L	N	E	H	I	I	E	K	A	R	V	H	Y	A	I	T	N	S	G	G	I	S	P	N	V	V	Q
Query Conservation
Alig confidence														.	.	.	.																	.																			.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.																	.																			.	.	.	.	.	.	.	.	.
Template Sequence		H	N	K	P	D	L	P	V	G	T	I	G	.	.	.	.	V	K	E	G	P	L	X	A	S	V	D	R	F	E	I	V	.	I	K	G	K	I	D	P	I	A	A	A	G	Q	I	I	S	G	L	.	.	.	.	.	.	.	.	.	Q	N	A	V	V	S	I	T	R	V	Q	A	G	T	S	W	N	V	I	P
Template Known Secondary structure					T	T	S		T	T				.	.	.	.			S														.																	T	T	.	.	.	.	.	.	.	.	.														S	S	S	S	S
Template Predicted Secondary structure														.	.	.	.																	.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.										.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	A	E	V	L	Y	L	I	R	A	P	E	M	T	D	V	Q	H	I	Y	D	R	V	A	K	I	A	E	G	A	A	L	M	T	E	T	T	V	E	C	R	F	D	K	A	C	S	S	Y	L	P	N	R	T	L	E	N	A	M	Y	Q	A	L	S	H	F	G	T	P	E	W	N	S	E	E	L	A	F	A
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		D	Q	A	E	X	E	G	T	V	R	T	F	Q	K	E	A	R	Q	A	V	P	E	H	X	R	R	V	A	E	G	I	A	A	G	Y	G	A	Q	A	E	F	K	W	F	P	Y	L	P	S	V	Q	N	D	G	T	F	L	N	A	A	S	E	A	A	A	R	L	G	Y	Q	T	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S											S	S																						T	T																		G	G	G										T	T	T				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	I	Q	A	T	L	T	S	N	D	R	Q	N	S	L	N	N	I	A	A	T	G	G	E	N	G	K	V	F	A	L	R	H	R	E	T	V	L	A	N	E	V	A	P	Y	A	A	T	D	N	V	L	A	A	S	T	D	V	G	D	V	S	W	K	L	P	V	A	Q	C	F	S	P	C	F	A	V	G	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	H	A	E	Q	S	P	G	G	E	D	F	A	L	Y	Q	E	K	I	P	G	F	F	V	W	X	G	T	N	G	T	E	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						B	S	S			T						T	T	S												S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																	316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	H	T	W	Q	L	V	S	Q	G	R	T	S	I	A	H	K	G	M	L	L	A	A	K	T	M	A	A	T	T	V	N	L	F	L	D
Query Conservation
Alig confidence			.						.	.	.	.	.	.
Template Conservation			.						.	.	.	.	.	.
Template Sequence		W	.	H	H	P	A	F	.	.	.	.	.	.	T	L	D	E	E	A	L	T	V	A	S	Q	Y	F	A	E	L	A	V	I	V	L	E	T
Template Known Secondary structure		T	.	T		T	T		.	.	.	.	.	.				T	T
Template Predicted Secondary structure			.						.	.	.	.	.	.
Template SS confidence
		349		350	.	.	.	.							.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.